Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.55■□□□□ 0.24
CCDC60Q8IWA6 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 AC104073.2-201ENST00000453737 312 ntBASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 AC005740.2-201ENST00000511085 419 ntBASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 AC138649.2-201ENST00000615886 705 ntBASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 Z98259.2-201ENST00000641583 609 ntBASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 AC004923.1-202ENST00000642106 209 ntBASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CCDC60Q8IWA6 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CCDC60Q8IWA6 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms