Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC12.55□□□□□ -0.4
HOXA1P49639 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC12.55□□□□□ -0.4
HOXA1P49639 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.55□□□□□ -0.4
HOXA1P49639 AL607033.1-201ENST00000623900 1599 ntBASIC12.55□□□□□ -0.4
HOXA1P49639 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HOXA1P49639 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HOXA1P49639 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 AC021752.1-202ENST00000613161 2398 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 AL353705.2-201ENST00000428243 662 ntBASIC12.54□□□□□ -0.4
HOXA1P49639 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC12.54□□□□□ -0.4
HOXA1P49639 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.54□□□□□ -0.4
HOXA1P49639 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.54□□□□□ -0.4
HOXA1P49639 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 AC079140.1-201ENST00000508039 487 ntBASIC12.54□□□□□ -0.4
HOXA1P49639 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 AC243562.1-201ENST00000560672 389 ntBASIC12.54□□□□□ -0.4
HOXA1P49639 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.54□□□□□ -0.4
HOXA1P49639 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.54□□□□□ -0.4
HOXA1P49639 AC097359.3-201ENST00000603982 1210 ntBASIC12.54□□□□□ -0.4
HOXA1P49639 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 AC092902.6-201ENST00000641783 218 ntBASIC12.54□□□□□ -0.4
HOXA1P49639 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA1P49639 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HOXA1P49639 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HOXA1P49639 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 FANCC-210ENST00000490972 2709 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA1P49639 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 AZGP1P1-201ENST00000411909 902 ntBASIC12.53□□□□□ -0.4
HOXA1P49639 AC136604.1-201ENST00000418535 575 ntBASIC12.53□□□□□ -0.4
HOXA1P49639 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA1P49639 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA1P49639 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms