Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC011247.3-201ENST00000603297 438 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 AC137695.1-201ENST00000604126 489 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 AC005632.3-201ENST00000605544 308 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 AC055811.4-201ENST00000624039 1754 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.09□□□□□ -0.31
COL8A1P27658 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.09□□□□□ -0.31
COL8A1P27658 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 AC068418.2-201ENST00000577309 3703 ntBASIC13.09□□□□□ -0.31
COL8A1P27658 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL8A1P27658 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
COL8A1P27658 AL662844.4-201ENST00000606367 2838 ntBASIC13.08□□□□□ -0.31
COL8A1P27658 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
COL8A1P27658 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.08□□□□□ -0.32
COL8A1P27658 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 MBLAC2-202ENST00000514906 1936 ntBASIC13.08□□□□□ -0.32
COL8A1P27658 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.08□□□□□ -0.32
COL8A1P27658 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC13.08□□□□□ -0.32
COL8A1P27658 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 VDAC1P1-201ENST00000439229 848 ntBASIC13.08□□□□□ -0.32
COL8A1P27658 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 AC004066.1-201ENST00000502488 802 ntBASIC13.08□□□□□ -0.32
COL8A1P27658 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC13.08□□□□□ -0.32
COL8A1P27658 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC13.08□□□□□ -0.32
COL8A1P27658 AP000240.1-201ENST00000609910 452 ntBASIC13.08□□□□□ -0.32
COL8A1P27658 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
COL8A1P27658 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.08□□□□□ -0.32
COL8A1P27658 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
COL8A1P27658 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.08□□□□□ -0.32
COL8A1P27658 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL8A1P27658 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.08□□□□□ -0.32
COL8A1P27658 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL8A1P27658 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.08□□□□□ -0.32
COL8A1P27658 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL8A1P27658 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 AC132872.4-202ENST00000622924 2756 ntBASIC13.07□□□□□ -0.32
COL8A1P27658 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
COL8A1P27658 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL8A1P27658 ACTBP7-201ENST00000418351 1124 ntBASIC13.07□□□□□ -0.32
COL8A1P27658 HCG27-204ENST00000424675 895 ntTSL 3 BASIC13.07□□□□□ -0.32
COL8A1P27658 AC004837.1-201ENST00000446267 564 ntBASIC13.07□□□□□ -0.32
COL8A1P27658 KLF2P1-201ENST00000447438 1042 ntBASIC13.07□□□□□ -0.32
COL8A1P27658 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC13.07□□□□□ -0.32
COL8A1P27658 RN7SL258P-201ENST00000478664 300 ntBASIC13.07□□□□□ -0.32
COL8A1P27658 AC091917.2-201ENST00000505002 744 ntBASIC13.07□□□□□ -0.32
COL8A1P27658 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC13.07□□□□□ -0.32
COL8A1P27658 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
COL8A1P27658 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.07□□□□□ -0.32
COL8A1P27658 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms