Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
COL4A1P02462 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A1P02462 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A1P02462 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A1P02462 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A1P02462 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A1P02462 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
COL4A1P02462 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL4A1P02462 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A1P02462 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC17.84■□□□□ 0.45
COL4A1P02462 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 AC130709.1-201ENST00000484779 1212 ntBASIC17.84■□□□□ 0.45
COL4A1P02462 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC17.84■□□□□ 0.45
COL4A1P02462 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 MIR3180-2-201ENST00000581748 88 ntBASIC17.84■□□□□ 0.45
COL4A1P02462 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC17.84■□□□□ 0.45
COL4A1P02462 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A1P02462 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A1P02462 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC17.84■□□□□ 0.45
COL4A1P02462 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 AC090502.4-201ENST00000551714 1386 ntBASIC17.84■□□□□ 0.45
COL4A1P02462 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A1P02462 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL4A1P02462 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
COL4A1P02462 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.84■□□□□ 0.45
COL4A1P02462 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL4A1P02462 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A1P02462 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC17.83■□□□□ 0.45
COL4A1P02462 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A1P02462 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.83■□□□□ 0.45
COL4A1P02462 AC073869.2-201ENST00000417338 1026 ntBASIC17.83■□□□□ 0.45
COL4A1P02462 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A1P02462 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC17.83■□□□□ 0.45
COL4A1P02462 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC17.83■□□□□ 0.45
COL4A1P02462 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC17.83■□□□□ 0.45
COL4A1P02462 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC17.83■□□□□ 0.45
COL4A1P02462 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC17.83■□□□□ 0.45
COL4A1P02462 TPM1-223ENST00000560445 485 ntTSL 3 BASIC17.83■□□□□ 0.45
COL4A1P02462 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A1P02462 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A1P02462 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A1P02462 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A1P02462 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.83■□□□□ 0.45
COL4A1P02462 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A1P02462 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.83■□□□□ 0.45
COL4A1P02462 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.83■□□□□ 0.45
COL4A1P02462 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.83■□□□□ 0.45
COL4A1P02462 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL4A1P02462 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.83■□□□□ 0.44
COL4A1P02462 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
COL4A1P02462 AL512306.1-201ENST00000432698 848 ntBASIC17.83■□□□□ 0.44
COL4A1P02462 AC012362.1-201ENST00000434906 739 ntBASIC17.83■□□□□ 0.44
COL4A1P02462 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
COL4A1P02462 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC17.83■□□□□ 0.44
COL4A1P02462 HLA-C-210ENST00000640219 976 ntBASIC17.83■□□□□ 0.44
COL4A1P02462 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL4A1P02462 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.82■□□□□ 0.44
COL4A1P02462 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL4A1P02462 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A1P02462 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A1P02462 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A1P02462 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL4A1P02462 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A1P02462 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms