Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX1O00570 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
SOX1O00570 PCDHA12-202ENST00000613593 2588 ntBASIC15.63■□□□□ 0.09
SOX1O00570 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
SOX1O00570 PIFO-201ENST00000369737 746 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 NQO2-204ENST00000380454 851 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 GEMIN8P4-201ENST00000380526 729 ntBASIC15.63■□□□□ 0.09
SOX1O00570 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC15.63■□□□□ 0.09
SOX1O00570 AL512599.1-201ENST00000430724 685 ntBASIC15.63■□□□□ 0.09
SOX1O00570 AL356000.1-201ENST00000441073 1238 ntBASIC15.63■□□□□ 0.09
SOX1O00570 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC15.63■□□□□ 0.09
SOX1O00570 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
SOX1O00570 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 SRP14-208ENST00000560773 468 ntTSL 3 BASIC15.63■□□□□ 0.09
SOX1O00570 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 AL357143.1-203ENST00000639750 881 ntBASIC15.63■□□□□ 0.09
SOX1O00570 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SOX1O00570 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SOX1O00570 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SOX1O00570 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.63■□□□□ 0.09
SOX1O00570 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.63■□□□□ 0.09
SOX1O00570 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SOX1O00570 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
SOX1O00570 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.62■□□□□ 0.09
SOX1O00570 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SOX1O00570 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.62■□□□□ 0.09
SOX1O00570 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
SOX1O00570 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC15.62■□□□□ 0.09
SOX1O00570 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC15.62■□□□□ 0.09
SOX1O00570 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX1O00570 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
SOX1O00570 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX1O00570 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX1O00570 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.62■□□□□ 0.09
SOX1O00570 FOXN3-AS2-201ENST00000554071 1262 ntBASIC15.62■□□□□ 0.09
SOX1O00570 AC091304.3-201ENST00000566500 716 ntBASIC15.62■□□□□ 0.09
SOX1O00570 SIGLEC22P-201ENST00000599104 714 ntBASIC15.62■□□□□ 0.09
SOX1O00570 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.62■□□□□ 0.09
SOX1O00570 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
SOX1O00570 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX1O00570 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 AHCYP4-201ENST00000419201 1315 ntBASIC15.62■□□□□ 0.09
SOX1O00570 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX1O00570 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.61■□□□□ 0.09
SOX1O00570 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX1O00570 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX1O00570 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX1O00570 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.61■□□□□ 0.09
SOX1O00570 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SOX1O00570 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX1O00570 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX1O00570 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX1O00570 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
SOX1O00570 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX1O00570 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SOX1O00570 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX1O00570 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX1O00570 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX1O00570 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms