Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 AC133552.6-201ENST00000613406 534 ntBASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 AC138951.2-201ENST00000623455 1161 ntBASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 LILRP1-201ENST00000444199 1370 ntBASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.34□□□□□ -0.11
HCN3Q9P1Z3 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HCN3Q9P1Z3 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
HCN3Q9P1Z3 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
HCN3Q9P1Z3 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HCN3Q9P1Z3 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
HCN3Q9P1Z3 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.33□□□□□ -0.11
HCN3Q9P1Z3 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.33□□□□□ -0.11
HCN3Q9P1Z3 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 RPL7P3-201ENST00000441388 714 ntBASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 KRT223P-202ENST00000449164 1292 ntBASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 AC026434.2-201ENST00000506094 1078 ntBASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 MIR4259-201ENST00000584466 101 ntBASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
HCN3Q9P1Z3 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 TPM3P8-201ENST00000330554 643 ntBASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.32□□□□□ -0.12
HCN3Q9P1Z3 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms