Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 TREML5P-201ENST00000421694 576 ntBASIC11.3□□□□□ -0.6
LINC00477Q96M19 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 RHOA-206ENST00000454011 889 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 AC026410.3-201ENST00000514280 936 ntBASIC11.3□□□□□ -0.6
LINC00477Q96M19 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 RARRES2P5-201ENST00000564013 466 ntBASIC11.3□□□□□ -0.6
LINC00477Q96M19 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 FUK-202ENST00000378912 3925 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 AL157414.3-201ENST00000624276 1954 ntBASIC11.3□□□□□ -0.6
LINC00477Q96M19 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
LINC00477Q96M19 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00477Q96M19 AL137783.1-201ENST00000623494 1896 ntBASIC11.29□□□□□ -0.6
LINC00477Q96M19 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 MIR943-201ENST00000401286 94 ntBASIC11.29□□□□□ -0.6
LINC00477Q96M19 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 AC009477.1-201ENST00000452936 217 ntBASIC11.29□□□□□ -0.6
LINC00477Q96M19 FAM86LP-201ENST00000478302 853 ntBASIC11.29□□□□□ -0.6
LINC00477Q96M19 IGHV3-42-201ENST00000520410 361 ntBASIC11.29□□□□□ -0.6
LINC00477Q96M19 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 RPS15-202ENST00000585665 467 ntTSL 3 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 SRD5A3P1-201ENST00000603021 949 ntBASIC11.29□□□□□ -0.6
LINC00477Q96M19 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 AC131212.3-201ENST00000624087 4219 ntBASIC11.29□□□□□ -0.6
LINC00477Q96M19 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
LINC00477Q96M19 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
LINC00477Q96M19 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms