Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 AC055876.3-201ENST00000431496 288 ntBASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 MEIS3P1-201ENST00000495167 958 ntBASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 AC008738.7-201ENST00000609744 511 ntBASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 AC138649.4-201ENST00000612222 287 ntBASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 AL158212.4-201ENST00000624062 1286 ntBASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLIP4Q8N3C7 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 AC004840.1-201ENST00000636359 365 ntBASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 CLK3P2-201ENST00000427566 1453 ntBASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 BTBD7P1-201ENST00000447253 1453 ntBASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLIP4Q8N3C7 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 AC087386.2-201ENST00000623212 4637 ntBASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLIP4Q8N3C7 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms