Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC17.45■□□□□ 0.38
COL4A5P29400 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A5P29400 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A5P29400 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A5P29400 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A5P29400 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A5P29400 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A5P29400 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL4A5P29400 ACE3P-201ENST00000423435 1973 ntBASIC17.45■□□□□ 0.38
COL4A5P29400 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL4A5P29400 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A5P29400 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A5P29400 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.45■□□□□ 0.38
COL4A5P29400 TEKT4P2-202ENST00000559466 1312 ntBASIC17.45■□□□□ 0.38
COL4A5P29400 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A5P29400 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC17.45■□□□□ 0.38
COL4A5P29400 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL4A5P29400 KLF17P1-201ENST00000547105 1126 ntBASIC17.45■□□□□ 0.38
COL4A5P29400 AP005264.6-204ENST00000588436 719 ntBASIC17.45■□□□□ 0.38
COL4A5P29400 AC006483.2-201ENST00000609813 515 ntBASIC17.45■□□□□ 0.38
COL4A5P29400 AL627230.2-201ENST00000613254 655 ntBASIC17.45■□□□□ 0.38
COL4A5P29400 ST5-261ENST00000626808 1071 ntTSL 5 BASIC17.45■□□□□ 0.38
COL4A5P29400 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A5P29400 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
COL4A5P29400 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A5P29400 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
COL4A5P29400 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
COL4A5P29400 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A5P29400 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A5P29400 RPS23-207ENST00000511844 530 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A5P29400 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC17.44■□□□□ 0.38
COL4A5P29400 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC17.44■□□□□ 0.38
COL4A5P29400 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC17.44■□□□□ 0.38
COL4A5P29400 KRT8P2-201ENST00000556193 944 ntBASIC17.44■□□□□ 0.38
COL4A5P29400 AC013553.1-201ENST00000560906 267 ntBASIC17.44■□□□□ 0.38
COL4A5P29400 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC17.44■□□□□ 0.38
COL4A5P29400 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
COL4A5P29400 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
COL4A5P29400 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL4A5P29400 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.44■□□□□ 0.38
COL4A5P29400 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
COL4A5P29400 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A5P29400 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A5P29400 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A5P29400 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL4A5P29400 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A5P29400 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
COL4A5P29400 RN7SL582P-201ENST00000491078 279 ntBASIC17.43■□□□□ 0.38
COL4A5P29400 RBM4-207ENST00000506523 654 ntTSL 3 BASIC17.43■□□□□ 0.38
COL4A5P29400 GDNF-207ENST00000515058 764 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A5P29400 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
COL4A5P29400 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC17.43■□□□□ 0.38
COL4A5P29400 MT2A-202ENST00000561491 581 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A5P29400 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC17.43■□□□□ 0.38
COL4A5P29400 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A5P29400 AC006548.2-201ENST00000605217 529 ntBASIC17.43■□□□□ 0.38
COL4A5P29400 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
COL4A5P29400 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A5P29400 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A5P29400 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A5P29400 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC17.42■□□□□ 0.38
COL4A5P29400 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL4A5P29400 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
COL4A5P29400 PRORSD1P-202ENST00000563365 2154 ntBASIC17.42■□□□□ 0.38
COL4A5P29400 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms