Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.2■□□□□ 0.02
HLA-DQB2P05538 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 FKBP4P6-201ENST00000457486 1332 ntBASIC15.19■□□□□ 0.02
HLA-DQB2P05538 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.19■□□□□ 0.02
HLA-DQB2P05538 CNN2P8-201ENST00000421872 913 ntBASIC15.19■□□□□ 0.02
HLA-DQB2P05538 U91328.1-201ENST00000437528 223 ntBASIC15.19■□□□□ 0.02
HLA-DQB2P05538 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 AC131206.1-201ENST00000538078 1211 ntBASIC15.19■□□□□ 0.02
HLA-DQB2P05538 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 AC106820.3-201ENST00000561653 397 ntBASIC15.19■□□□□ 0.02
HLA-DQB2P05538 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 AC138951.2-201ENST00000623455 1161 ntBASIC15.19■□□□□ 0.02
HLA-DQB2P05538 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQB2P05538 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AC009093.2-202ENST00000620513 2079 ntBASIC15.18■□□□□ 0.02
HLA-DQB2P05538 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 PDIA3P1-201ENST00000471856 1510 ntBASIC15.18■□□□□ 0.02
HLA-DQB2P05538 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AC015656.1-201ENST00000624209 3578 ntBASIC15.18■□□□□ 0.02
HLA-DQB2P05538 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AC139749.1-202ENST00000617529 3139 ntBASIC15.18■□□□□ 0.02
HLA-DQB2P05538 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQB2P05538 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms