Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC17.87■□□□□ 0.45
COL4A1P02462 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC17.87■□□□□ 0.45
COL4A1P02462 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
COL4A1P02462 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL4A1P02462 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC17.87■□□□□ 0.45
COL4A1P02462 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC17.87■□□□□ 0.45
COL4A1P02462 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 PIN4P1-201ENST00000451079 396 ntBASIC17.87■□□□□ 0.45
COL4A1P02462 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 MT3-203ENST00000565838 421 ntTSL 3 BASIC17.87■□□□□ 0.45
COL4A1P02462 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL4A1P02462 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC17.87■□□□□ 0.45
COL4A1P02462 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
COL4A1P02462 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A1P02462 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
COL4A1P02462 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A1P02462 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
COL4A1P02462 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
COL4A1P02462 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
COL4A1P02462 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
COL4A1P02462 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A1P02462 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A1P02462 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL4A1P02462 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL4A1P02462 CYP51A1P3-201ENST00000400072 1428 ntBASIC17.86■□□□□ 0.45
COL4A1P02462 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A1P02462 HIST2H2BA-201ENST00000412169 381 ntBASIC17.86■□□□□ 0.45
COL4A1P02462 CHCHD2P9-201ENST00000461726 456 ntBASIC17.86■□□□□ 0.45
COL4A1P02462 AC114947.1-202ENST00000514136 344 ntBASIC17.86■□□□□ 0.45
COL4A1P02462 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A1P02462 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A1P02462 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A1P02462 AC007952.4-201ENST00000573866 637 ntBASIC17.86■□□□□ 0.45
COL4A1P02462 ELP5-212ENST00000574255 671 ntTSL 2 BASIC17.86■□□□□ 0.45
COL4A1P02462 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC17.86■□□□□ 0.45
COL4A1P02462 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL4A1P02462 AC105137.3-201ENST00000617588 984 ntBASIC17.86■□□□□ 0.45
COL4A1P02462 AC067931.2-201ENST00000623655 2003 ntBASIC17.86■□□□□ 0.45
COL4A1P02462 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 MARK2P16-201ENST00000605714 1723 ntBASIC17.85■□□□□ 0.45
COL4A1P02462 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A1P02462 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A1P02462 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A1P02462 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 KRT17P5-201ENST00000332088 839 ntBASIC17.85■□□□□ 0.45
COL4A1P02462 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
COL4A1P02462 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 DUX4L50-201ENST00000455245 715 ntBASIC17.85■□□□□ 0.45
COL4A1P02462 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC17.85■□□□□ 0.45
COL4A1P02462 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC17.85■□□□□ 0.45
COL4A1P02462 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 MIR6756-201ENST00000616240 63 ntBASIC17.85■□□□□ 0.45
COL4A1P02462 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL4A1P02462 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL4A1P02462 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A1P02462 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A1P02462 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.85■□□□□ 0.45
COL4A1P02462 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
COL4A1P02462 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.85■□□□□ 0.45
COL4A1P02462 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms