Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 TSN-212ENST00000536142 3328 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DQA1P01909 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AL118506.1-201ENST00000601296 3082 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AC018712.1-201ENST00000455767 687 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 RPS15P9-201ENST00000494093 319 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AC105339.3-201ENST00000560043 636 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 MIR4751-201ENST00000578027 74 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 KLK8-205ENST00000593490 267 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AL356488.2-201ENST00000602755 427 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AC148477.8-201ENST00000624298 468 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AP002414.3-201ENST00000589352 1468 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 RBM44-201ENST00000316997 4282 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 CICP16-201ENST00000502609 2813 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 PTPRVP-205ENST00000641549 5067 ntBASIC11.35□□□□□ -0.59
HLA-DQA1P01909 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DQA1P01909 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DQA1P01909 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms