Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 BTNL10-201ENST00000595971 695 ntBASIC14.66□□□□□ -0.06
VPS4AQ9UN37 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 MIR6869-201ENST00000619434 62 ntBASIC14.66□□□□□ -0.06
VPS4AQ9UN37 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.65□□□□□ -0.06
VPS4AQ9UN37 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 AC074338.1-201ENST00000416825 156 ntBASIC14.65□□□□□ -0.06
VPS4AQ9UN37 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 MIR8072-201ENST00000614241 80 ntBASIC14.65□□□□□ -0.06
VPS4AQ9UN37 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 Z97205.2-201ENST00000564697 1639 ntBASIC14.65□□□□□ -0.06
VPS4AQ9UN37 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS4AQ9UN37 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
VPS4AQ9UN37 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 AC020907.1-201ENST00000616460 1350 ntBASIC14.64□□□□□ -0.07
VPS4AQ9UN37 ACE3P-201ENST00000423435 1973 ntBASIC14.64□□□□□ -0.07
VPS4AQ9UN37 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
VPS4AQ9UN37 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms