Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 ZNF890P-202ENST00000530367 1156 ntBASIC14.89□□□□□ -0.03
SSU72Q9NP77 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 AC092337.1-201ENST00000568699 1129 ntBASIC14.89□□□□□ -0.03
SSU72Q9NP77 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 C8orf49-201ENST00000525043 1968 ntBASIC14.89□□□□□ -0.03
SSU72Q9NP77 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
SSU72Q9NP77 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
SSU72Q9NP77 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 AL138799.1-201ENST00000448213 1675 ntBASIC14.88□□□□□ -0.03
SSU72Q9NP77 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 YBX1P5-201ENST00000509441 847 ntBASIC14.88□□□□□ -0.03
SSU72Q9NP77 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 AC005829.1-201ENST00000570002 483 ntBASIC14.88□□□□□ -0.03
SSU72Q9NP77 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 AC004835.2-201ENST00000603762 682 ntBASIC14.88□□□□□ -0.03
SSU72Q9NP77 AC107918.4-201ENST00000641966 3141 ntBASIC14.88□□□□□ -0.03
SSU72Q9NP77 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 DRD5P1-201ENST00000456605 1438 ntBASIC14.88□□□□□ -0.03
SSU72Q9NP77 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
SSU72Q9NP77 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SSU72Q9NP77 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms