Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC23.08■■□□□ 1.28
VPS8Q8N3P4 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC23.08■■□□□ 1.28
VPS8Q8N3P4 MEG3_2.1-201ENST00000611456 105 ntBASIC23.08■■□□□ 1.28
VPS8Q8N3P4 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC23.08■■□□□ 1.28
VPS8Q8N3P4 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 AP001267.2-201ENST00000532619 2086 ntBASIC23.07■■□□□ 1.28
VPS8Q8N3P4 TUBBP5-203ENST00000508529 1334 ntBASIC23.07■■□□□ 1.28
VPS8Q8N3P4 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 BCYRN1-201ENST00000418539 200 ntBASIC23.07■■□□□ 1.28
VPS8Q8N3P4 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 ADM-202ENST00000524948 584 ntTSL 2 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
VPS8Q8N3P4 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 AC113367.3-201ENST00000508316 1912 ntBASIC23.06■■□□□ 1.28
VPS8Q8N3P4 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 FNTAP2-201ENST00000430308 634 ntBASIC23.06■■□□□ 1.28
VPS8Q8N3P4 SORD2P-201ENST00000558556 1069 ntBASIC23.06■■□□□ 1.28
VPS8Q8N3P4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 NAT9-222ENST00000583476 583 ntTSL 3 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 AL136295.7-201ENST00000619226 1200 ntBASIC23.06■■□□□ 1.28
VPS8Q8N3P4 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
VPS8Q8N3P4 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 AC011742.3-201ENST00000439053 820 ntBASIC23.05■■□□□ 1.28
VPS8Q8N3P4 RERG-205ENST00000537647 935 ntTSL 2 BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 AC008132.1-202ENST00000342005 1389 ntBASIC23.05■■□□□ 1.28
VPS8Q8N3P4 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
VPS8Q8N3P4 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
VPS8Q8N3P4 CYP46A4P-201ENST00000414953 267 ntBASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms