Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM1O00151 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM1O00151 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM1O00151 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PDLIM1O00151 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.43□□□□□ -0.1
PDLIM1O00151 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM1O00151 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM1O00151 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM1O00151 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.43□□□□□ -0.1
PDLIM1O00151 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.43□□□□□ -0.1
PDLIM1O00151 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.43□□□□□ -0.1
PDLIM1O00151 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PDLIM1O00151 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
PDLIM1O00151 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM1O00151 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.43□□□□□ -0.1
PDLIM1O00151 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM1O00151 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.43□□□□□ -0.1
PDLIM1O00151 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PDLIM1O00151 CYP4F24P-201ENST00000586049 1580 ntBASIC14.43□□□□□ -0.1
PDLIM1O00151 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
PDLIM1O00151 AL118506.1-201ENST00000601296 3082 ntBASIC14.43□□□□□ -0.1
PDLIM1O00151 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 AC015802.1-201ENST00000588104 1449 ntBASIC14.42□□□□□ -0.1
PDLIM1O00151 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.42□□□□□ -0.1
PDLIM1O00151 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC14.42□□□□□ -0.1
PDLIM1O00151 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
PDLIM1O00151 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 AC004945.1-201ENST00000416738 983 ntBASIC14.42□□□□□ -0.1
PDLIM1O00151 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.42□□□□□ -0.1
PDLIM1O00151 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.42□□□□□ -0.1
PDLIM1O00151 SPDYE14P-201ENST00000442619 822 ntBASIC14.42□□□□□ -0.1
PDLIM1O00151 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PDLIM1O00151 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.42□□□□□ -0.1
PDLIM1O00151 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.42□□□□□ -0.1
PDLIM1O00151 AC015911.4-201ENST00000588022 1070 ntBASIC14.42□□□□□ -0.1
PDLIM1O00151 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.42□□□□□ -0.1
PDLIM1O00151 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
PDLIM1O00151 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PDLIM1O00151 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.42□□□□□ -0.1
PDLIM1O00151 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 AC134407.3-201ENST00000624035 2139 ntBASIC14.42□□□□□ -0.1
PDLIM1O00151 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
PDLIM1O00151 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 DPP10-201ENST00000310323 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PDLIM1O00151 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.42□□□□□ -0.1
PDLIM1O00151 AC067750.1-201ENST00000608826 6545 ntBASIC14.41□□□□□ -0.1
PDLIM1O00151 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
PDLIM1O00151 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.41□□□□□ -0.1
PDLIM1O00151 TRIM80P-201ENST00000455685 2848 ntBASIC14.41□□□□□ -0.1
PDLIM1O00151 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
PDLIM1O00151 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PDLIM1O00151 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
PDLIM1O00151 FAM220BP-201ENST00000377689 816 ntBASIC14.41□□□□□ -0.1
PDLIM1O00151 PMS2P2-201ENST00000425039 1128 ntBASIC14.41□□□□□ -0.1
PDLIM1O00151 RBPMS2P1-201ENST00000437762 623 ntBASIC14.41□□□□□ -0.1
PDLIM1O00151 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.41□□□□□ -0.1
PDLIM1O00151 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 ALG1L8P-201ENST00000533887 760 ntBASIC14.41□□□□□ -0.1
PDLIM1O00151 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.41□□□□□ -0.1
PDLIM1O00151 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PDLIM1O00151 AC026150.2-201ENST00000564693 1156 ntBASIC14.41□□□□□ -0.1
PDLIM1O00151 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms