Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.84□□□□□ -0.03
PKNOX1P55347 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PKNOX1P55347 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
PKNOX1P55347 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
PKNOX1P55347 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PKNOX1P55347 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PKNOX1P55347 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
PKNOX1P55347 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
PKNOX1P55347 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PKNOX1P55347 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
PKNOX1P55347 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
PKNOX1P55347 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.83□□□□□ -0.04
PKNOX1P55347 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.83□□□□□ -0.04
PKNOX1P55347 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.83□□□□□ -0.04
PKNOX1P55347 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.83□□□□□ -0.04
PKNOX1P55347 FAM86GP-201ENST00000448322 971 ntBASIC14.83□□□□□ -0.04
PKNOX1P55347 GAPDHP40-201ENST00000505218 1006 ntBASIC14.83□□□□□ -0.04
PKNOX1P55347 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.83□□□□□ -0.04
PKNOX1P55347 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.83□□□□□ -0.04
PKNOX1P55347 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.83□□□□□ -0.04
PKNOX1P55347 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
PKNOX1P55347 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
PKNOX1P55347 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
PKNOX1P55347 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
PKNOX1P55347 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
PKNOX1P55347 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.83□□□□□ -0.04
PKNOX1P55347 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
PKNOX1P55347 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PKNOX1P55347 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PKNOX1P55347 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
PKNOX1P55347 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
PKNOX1P55347 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
PKNOX1P55347 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 AC241585.1-201ENST00000433527 519 ntBASIC14.82□□□□□ -0.04
PKNOX1P55347 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.82□□□□□ -0.04
PKNOX1P55347 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.82□□□□□ -0.04
PKNOX1P55347 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.82□□□□□ -0.04
PKNOX1P55347 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.82□□□□□ -0.04
PKNOX1P55347 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
PKNOX1P55347 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.82□□□□□ -0.04
PKNOX1P55347 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
PKNOX1P55347 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 AC126335.2-201ENST00000623362 4637 ntBASIC14.82□□□□□ -0.04
PKNOX1P55347 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.82□□□□□ -0.04
PKNOX1P55347 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.82□□□□□ -0.04
PKNOX1P55347 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
PKNOX1P55347 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.82□□□□□ -0.04
PKNOX1P55347 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PKNOX1P55347 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PKNOX1P55347 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
PKNOX1P55347 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PKNOX1P55347 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.81□□□□□ -0.04
PKNOX1P55347 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.81□□□□□ -0.04
PKNOX1P55347 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms