Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
MSX1P28360 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
MSX1P28360 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.83□□□□□ -0.2
MSX1P28360 ARL4AP4-201ENST00000434170 518 ntBASIC13.83□□□□□ -0.2
MSX1P28360 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.83□□□□□ -0.2
MSX1P28360 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.83□□□□□ -0.2
MSX1P28360 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.83□□□□□ -0.2
MSX1P28360 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.83□□□□□ -0.2
MSX1P28360 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX1P28360 AC079316.1-201ENST00000548397 411 ntBASIC13.83□□□□□ -0.2
MSX1P28360 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.83□□□□□ -0.2
MSX1P28360 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.83□□□□□ -0.2
MSX1P28360 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
MSX1P28360 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
MSX1P28360 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MSX1P28360 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX1P28360 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
MSX1P28360 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX1P28360 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.83□□□□□ -0.2
MSX1P28360 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
MSX1P28360 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 AL157414.3-201ENST00000624276 1954 ntBASIC13.82□□□□□ -0.2
MSX1P28360 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.82□□□□□ -0.2
MSX1P28360 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 YBX1P6-201ENST00000442962 1002 ntBASIC13.82□□□□□ -0.2
MSX1P28360 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.82□□□□□ -0.2
MSX1P28360 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
MSX1P28360 PFN1P12-201ENST00000455938 534 ntBASIC13.82□□□□□ -0.2
MSX1P28360 AC007551.1-201ENST00000457394 519 ntBASIC13.82□□□□□ -0.2
MSX1P28360 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.82□□□□□ -0.2
MSX1P28360 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.82□□□□□ -0.2
MSX1P28360 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 AC103810.3-201ENST00000583567 96 ntBASIC13.82□□□□□ -0.2
MSX1P28360 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 AC244093.1-201ENST00000610837 814 ntBASIC13.82□□□□□ -0.2
MSX1P28360 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC13.82□□□□□ -0.2
MSX1P28360 AC132938.4-201ENST00000623835 848 ntBASIC13.82□□□□□ -0.2
MSX1P28360 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
MSX1P28360 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
MSX1P28360 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
MSX1P28360 ACE3P-201ENST00000423435 1973 ntBASIC13.82□□□□□ -0.2
MSX1P28360 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms