Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGB1P09429 INTS4P1-203ENST00000641008 3683 ntBASIC17.73■□□□□ 0.43
HMGB1P09429 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HMGB1P09429 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGB1P09429 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.72■□□□□ 0.43
HMGB1P09429 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.72■□□□□ 0.43
HMGB1P09429 AL355864.2-201ENST00000447420 863 ntBASIC17.72■□□□□ 0.43
HMGB1P09429 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.72■□□□□ 0.43
HMGB1P09429 MESTP3-201ENST00000503460 968 ntBASIC17.72■□□□□ 0.43
HMGB1P09429 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGB1P09429 AP001889.1-201ENST00000525414 633 ntBASIC17.72■□□□□ 0.43
HMGB1P09429 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.72■□□□□ 0.43
HMGB1P09429 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HMGB1P09429 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 AC004466.1-201ENST00000599515 1080 ntBASIC17.72■□□□□ 0.43
HMGB1P09429 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGB1P09429 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGB1P09429 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.71■□□□□ 0.43
HMGB1P09429 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGB1P09429 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
HMGB1P09429 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 AC005089.1-201ENST00000619486 2241 ntBASIC17.71■□□□□ 0.43
HMGB1P09429 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HMGB1P09429 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HMGB1P09429 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
HMGB1P09429 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGB1P09429 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 POM121L8P-201ENST00000417732 1281 ntBASIC17.71■□□□□ 0.43
HMGB1P09429 POM121L9P-203ENST00000441984 1285 ntBASIC17.71■□□□□ 0.43
HMGB1P09429 RN7SL692P-201ENST00000464677 288 ntBASIC17.71■□□□□ 0.43
HMGB1P09429 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HMGB1P09429 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGB1P09429 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGB1P09429 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
HMGB1P09429 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGB1P09429 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.71■□□□□ 0.43
HMGB1P09429 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGB1P09429 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGB1P09429 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
HMGB1P09429 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 AC015802.1-201ENST00000588104 1449 ntBASIC17.71■□□□□ 0.43
HMGB1P09429 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGB1P09429 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
HMGB1P09429 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
HMGB1P09429 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.71■□□□□ 0.42
HMGB1P09429 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
HMGB1P09429 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.42
HMGB1P09429 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.71■□□□□ 0.42
HMGB1P09429 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB1P09429 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.7■□□□□ 0.42
HMGB1P09429 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 AGGF1P1-201ENST00000509500 2073 ntBASIC17.7■□□□□ 0.42
HMGB1P09429 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HMGB1P09429 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGB1P09429 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGB1P09429 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGB1P09429 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms