Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC19.45■□□□□ 0.7
COL3A1P02461 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
COL3A1P02461 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC19.45■□□□□ 0.7
COL3A1P02461 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC19.45■□□□□ 0.7
COL3A1P02461 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL3A1P02461 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.45■□□□□ 0.7
COL3A1P02461 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
COL3A1P02461 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 HNRNPA1P41-201ENST00000397777 928 ntBASIC19.45■□□□□ 0.7
COL3A1P02461 CMC1-204ENST00000423894 549 ntTSL 2 BASIC19.45■□□□□ 0.7
COL3A1P02461 AC073150.1-201ENST00000450406 1084 ntBASIC19.45■□□□□ 0.7
COL3A1P02461 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC19.45■□□□□ 0.7
COL3A1P02461 PGAM1P5-201ENST00000548011 764 ntBASIC19.45■□□□□ 0.7
COL3A1P02461 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC19.45■□□□□ 0.7
COL3A1P02461 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC19.45■□□□□ 0.7
COL3A1P02461 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
COL3A1P02461 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
COL3A1P02461 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL3A1P02461 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL3A1P02461 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.44■□□□□ 0.7
COL3A1P02461 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC19.44■□□□□ 0.7
COL3A1P02461 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
COL3A1P02461 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 RER1-203ENST00000378513 3000 ntTSL 3 BASIC19.44■□□□□ 0.7
COL3A1P02461 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL3A1P02461 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL3A1P02461 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19.44■□□□□ 0.7
COL3A1P02461 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC19.44■□□□□ 0.7
COL3A1P02461 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC19.44■□□□□ 0.7
COL3A1P02461 MIR4754-201ENST00000582477 89 ntBASIC19.44■□□□□ 0.7
COL3A1P02461 KLK3-207ENST00000595952 969 ntTSL 3 BASIC19.44■□□□□ 0.7
COL3A1P02461 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 AC104506.1-201ENST00000609247 429 ntBASIC19.44■□□□□ 0.7
COL3A1P02461 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL3A1P02461 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL3A1P02461 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL3A1P02461 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL3A1P02461 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC19.44■□□□□ 0.7
COL3A1P02461 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL3A1P02461 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL3A1P02461 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL3A1P02461 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL3A1P02461 AC090505.1-201ENST00000430515 1834 ntBASIC19.43■□□□□ 0.7
COL3A1P02461 MVK-214ENST00000629016 1591 ntTSL 5 BASIC19.43■□□□□ 0.7
COL3A1P02461 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC19.43■□□□□ 0.7
COL3A1P02461 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC19.43■□□□□ 0.7
COL3A1P02461 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC19.43■□□□□ 0.7
COL3A1P02461 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COL3A1P02461 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC19.43■□□□□ 0.7
COL3A1P02461 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL3A1P02461 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.43■□□□□ 0.7
COL3A1P02461 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC19.43■□□□□ 0.7
COL3A1P02461 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC19.43■□□□□ 0.7
COL3A1P02461 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COL3A1P02461 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL3A1P02461 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC19.43■□□□□ 0.7
COL3A1P02461 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL3A1P02461 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC19.43■□□□□ 0.7
COL3A1P02461 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL3A1P02461 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL3A1P02461 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL3A1P02461 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL3A1P02461 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL3A1P02461 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms