Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SCN4AP35499 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SCN4AP35499 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC17.23■□□□□ 0.35
SCN4AP35499 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.23■□□□□ 0.35
SCN4AP35499 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.23■□□□□ 0.35
SCN4AP35499 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SCN4AP35499 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
SCN4AP35499 AC010900.1-201ENST00000449849 1296 ntBASIC17.23■□□□□ 0.35
SCN4AP35499 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 AC092612.1-201ENST00000514501 998 ntBASIC17.23■□□□□ 0.35
SCN4AP35499 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
SCN4AP35499 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC17.23■□□□□ 0.35
SCN4AP35499 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.23■□□□□ 0.35
SCN4AP35499 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.23■□□□□ 0.35
SCN4AP35499 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SCN4AP35499 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SCN4AP35499 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SCN4AP35499 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC17.22■□□□□ 0.35
SCN4AP35499 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC17.22■□□□□ 0.35
SCN4AP35499 AC019109.1-201ENST00000401725 1874 ntBASIC17.22■□□□□ 0.35
SCN4AP35499 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC17.22■□□□□ 0.35
SCN4AP35499 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC17.22■□□□□ 0.35
SCN4AP35499 BCRP4-201ENST00000506079 804 ntBASIC17.22■□□□□ 0.35
SCN4AP35499 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC17.22■□□□□ 0.35
SCN4AP35499 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.22■□□□□ 0.35
SCN4AP35499 KLF17P1-201ENST00000547105 1126 ntBASIC17.22■□□□□ 0.35
SCN4AP35499 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 FKBP4P8-201ENST00000610931 1369 ntBASIC17.22■□□□□ 0.35
SCN4AP35499 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.22■□□□□ 0.35
SCN4AP35499 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SCN4AP35499 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SCN4AP35499 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC17.22■□□□□ 0.35
SCN4AP35499 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 RN7SL147P-201ENST00000487345 298 ntBASIC17.21■□□□□ 0.35
SCN4AP35499 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC17.21■□□□□ 0.35
SCN4AP35499 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 NDUFB10P1-201ENST00000567319 521 ntBASIC17.21■□□□□ 0.35
SCN4AP35499 MED11-202ENST00000573708 802 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC17.21■□□□□ 0.35
SCN4AP35499 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 AC106820.2-201ENST00000563775 3264 ntBASIC17.21■□□□□ 0.35
SCN4AP35499 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC17.21■□□□□ 0.35
SCN4AP35499 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 WASH7P-201ENST00000488147 1351 ntBASIC17.21■□□□□ 0.35
SCN4AP35499 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.21■□□□□ 0.35
SCN4AP35499 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 SAT1-201ENST00000379251 801 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 SAT1-202ENST00000379253 909 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 SAT1-203ENST00000379254 868 ntTSL 3 BASIC17.21■□□□□ 0.35
SCN4AP35499 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 ALG1L7P-201ENST00000502317 768 ntBASIC17.21■□□□□ 0.35
SCN4AP35499 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC17.21■□□□□ 0.35
SCN4AP35499 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC17.21■□□□□ 0.35
SCN4AP35499 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC17.21■□□□□ 0.35
SCN4AP35499 TYMSP2-201ENST00000589501 424 ntBASIC17.21■□□□□ 0.35
SCN4AP35499 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SCN4AP35499 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms