Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TXNL4A-205ENST00000586295 706 ntTSL 334.26■■■■□ 3.084e-8■□□□□ 9.5
YBX3P16989 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC33.94■■■■□ 3.024e-8■□□□□ 9.5
YBX3P16989 PVT1-224ENST00000616386 113 nt3.58□□□□□ -1.844e-17■□□□□ 9.5
YBX3P16989 HK1-204ENST00000421088 707 ntTSL 58.5□□□□□ -1.057e-10■□□□□ 9.5
YBX3P16989 HK1-207ENST00000450646 739 ntTSL 55.7□□□□□ -1.57e-10■□□□□ 9.5
YBX3P16989 GPX4-205ENST00000587932 274 ntTSL 237.26■■■■□ 3.567e-8■□□□□ 9.5
YBX3P16989 CDC34-206ENST00000606400 899 ntTSL 223.22■■□□□ 1.314e-7■□□□□ 9.5
YBX3P16989 KDM3A-208ENST00000463013 577 ntTSL 37.32□□□□□ -1.246e-9■□□□□ 9.5
YBX3P16989 ZDHHC4-209ENST00000483589 807 ntTSL 217.97■□□□□ 0.471e-6■□□□□ 9.5
YBX3P16989 ZDHHC4-207ENST00000474097 1604 ntTSL 512.95□□□□□ -0.341e-6■□□□□ 9.5
YBX3P16989 ZDHHC4-211ENST00000493944 641 ntTSL 28.88□□□□□ -0.991e-6■□□□□ 9.5
YBX3P16989 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.415e-7■□□□□ 9.5
YBX3P16989 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.18□□□□□ -1.585e-7■□□□□ 9.5
YBX3P16989 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.06□□□□□ -1.765e-7■□□□□ 9.5
YBX3P16989 PHGDH-227ENST00000641811 1031 nt22.56■■□□□ 1.22e-7■□□□□ 9.5
YBX3P16989 PLCD1-206ENST00000479619 577 ntTSL 317.27■□□□□ 0.361e-10■□□□□ 9.5
YBX3P16989 SLC2A1-208ENST00000630287 2398 ntTSL 515.77■□□□□ 0.113e-14■□□□□ 9.5
YBX3P16989 SLC2A1-203ENST00000426263 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.433e-14■□□□□ 9.5
YBX3P16989 SYMPK-208ENST00000598059 611 ntTSL 428.98■■■□□ 2.234e-8■□□□□ 9.5
YBX3P16989 SYMPK-205ENST00000594293 623 ntTSL 424.44■■□□□ 1.54e-8■□□□□ 9.5
YBX3P16989 SYMPK-204ENST00000593959 546 ntTSL 422.2■■□□□ 1.144e-8■□□□□ 9.5
YBX3P16989 SYMPK-218ENST00000602061 503 ntTSL 417.63■□□□□ 0.414e-8■□□□□ 9.5
YBX3P16989 KIAA1191-206ENST00000506613 540 ntTSL 422.25■■□□□ 1.152e-9■□□□□ 9.5
YBX3P16989 KIAA1191-209ENST00000508023 562 ntTSL 216.19■□□□□ 0.182e-9■□□□□ 9.5
YBX3P16989 CD164-205ENST00000415861 4963 ntTSL 1 (best)4.62□□□□□ -1.673e-13■□□□□ 9.5
YBX3P16989 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC11.01□□□□□ -0.655e-9■□□□□ 9.5
YBX3P16989 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.065e-9■□□□□ 9.5
YBX3P16989 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.175e-9■□□□□ 9.5
YBX3P16989 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC24.04■■□□□ 1.444e-7■□□□□ 9.5
YBX3P16989 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.14e-7■□□□□ 9.5
YBX3P16989 AVL9-202ENST00000409301 4336 ntTSL 5 BASIC12.82□□□□□ -0.364e-7■□□□□ 9.5
YBX3P16989 AVL9-203ENST00000446718 6372 ntTSL 58.97□□□□□ -0.974e-7■□□□□ 9.5
YBX3P16989 A2M-210ENST00000542567 563 ntTSL 49.15□□□□□ -0.949e-38■□□□□ 9.5
YBX3P16989 SLC16A1-203ENST00000443580 1099 ntTSL 313.52□□□□□ -0.256e-7■□□□□ 9.5
YBX3P16989 DDB1-218ENST00000540784 1119 ntTSL 319.49■□□□□ 0.718e-12■□□□□ 9.5
YBX3P16989 DDB1-216ENST00000539739 1624 ntTSL 518.98■□□□□ 0.638e-12■□□□□ 9.5
YBX3P16989 DDB1-207ENST00000535967 1404 ntTSL 316.96■□□□□ 0.38e-12■□□□□ 9.5
YBX3P16989 DDB1-209ENST00000537877 1375 ntTSL 214.6□□□□□ -0.078e-12■□□□□ 9.5
YBX3P16989 DDB1-202ENST00000414411 1904 ntTSL 212.1□□□□□ -0.478e-12■□□□□ 9.5
YBX3P16989 DDB1-204ENST00000535147 2789 ntTSL 210.38□□□□□ -0.758e-12■□□□□ 9.5
YBX3P16989 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.141e-8■□□□□ 9.5
YBX3P16989 CSNK1A1-201ENST00000261798 6067 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.661e-8■□□□□ 9.5
YBX3P16989 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC24.81■■□□□ 1.562e-23■□□□□ 9.5
YBX3P16989 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.35■□□□□ 0.692e-23■□□□□ 9.5
YBX3P16989 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.94■□□□□ 0.462e-23■□□□□ 9.5
YBX3P16989 RTN4-211ENST00000438462 656 ntTSL 517.73■□□□□ 0.432e-23■□□□□ 9.5
YBX3P16989 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC14.06□□□□□ -0.162e-23■□□□□ 9.5
YBX3P16989 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC9.4□□□□□ -0.92e-23■□□□□ 9.5
YBX3P16989 RTN4-214ENST00000486085 955 ntTSL 38.35□□□□□ -1.072e-23■□□□□ 9.5
YBX3P16989 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.142e-23■□□□□ 9.5
YBX3P16989 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.97□□□□□ -1.292e-23■□□□□ 9.5
YBX3P16989 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.36□□□□□ -1.712e-23■□□□□ 9.5
YBX3P16989 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.94□□□□□ -1.782e-23■□□□□ 9.5
YBX3P16989 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC7.82□□□□□ -1.162e-7■□□□□ 9.5
YBX3P16989 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC5.83□□□□□ -1.482e-7■□□□□ 9.5
YBX3P16989 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.212e-6■□□□□ 9.5
YBX3P16989 EIF5-211ENST00000559532 678 ntTSL 433.91■■■■□ 3.022e-12■□□□□ 9.5
YBX3P16989 EIF5-209ENST00000559130 583 ntTSL 326.75■■□□□ 1.872e-12■□□□□ 9.5
YBX3P16989 EIF5-215ENST00000560763 723 ntTSL 224.14■■□□□ 1.452e-12■□□□□ 9.5
YBX3P16989 EIF5-214ENST00000560338 580 ntTSL 323.48■■□□□ 1.352e-12■□□□□ 9.5
YBX3P16989 EIF5-210ENST00000559249 704 ntTSL 221.42■■□□□ 1.022e-12■□□□□ 9.5
YBX3P16989 EIF5-204ENST00000558316 719 ntTSL 318.9■□□□□ 0.622e-12■□□□□ 9.5
YBX3P16989 EIF5-203ENST00000558265 872 ntTSL 518.72■□□□□ 0.592e-12■□□□□ 9.5
YBX3P16989 EIF5-218ENST00000561325 569 ntTSL 47.48□□□□□ -1.212e-12■□□□□ 9.5
YBX3P16989 EIF5-213ENST00000560200 776 ntTSL 57.36□□□□□ -1.232e-12■□□□□ 9.5
YBX3P16989 EIF5-206ENST00000558551 744 ntTSL 27.3□□□□□ -1.242e-12■□□□□ 9.5
YBX3P16989 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC24.05■■□□□ 1.443e-6■□□□□ 9.5
YBX3P16989 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.813e-6■□□□□ 9.5
YBX3P16989 PTCD3-201ENST00000254630 6734 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.983e-8■□□□□ 9.5
YBX3P16989 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC27.08■■□□□ 1.933e-6■□□□□ 9.5
YBX3P16989 MYO19-215ENST00000616159 963 ntTSL 226.41■■□□□ 1.823e-6■□□□□ 9.5
YBX3P16989 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.69■□□□□ 0.93e-6■□□□□ 9.5
YBX3P16989 MYO19-227ENST00000622055 897 ntTSL 313.15□□□□□ -0.33e-6■□□□□ 9.5
YBX3P16989 GPI-204ENST00000586392 1706 ntTSL 218.18■□□□□ 0.53e-14■□□□□ 9.5
YBX3P16989 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.156e-7■□□□□ 9.5
YBX3P16989 USP22-202ENST00000455117 677 ntTSL 513.72□□□□□ -0.216e-7■□□□□ 9.5
YBX3P16989 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.266e-7■□□□□ 9.5
YBX3P16989 MARCH7-206ENST00000461582 292 ntTSL 34.71□□□□□ -1.661e-10■□□□□ 9.5
YBX3P16989 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.731e-6■□□□□ 9.5
YBX3P16989 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.06■□□□□ 0.161e-6■□□□□ 9.5
YBX3P16989 COPG1-205ENST00000509889 599 ntTSL 510.77□□□□□ -0.692e-7■□□□□ 9.5
YBX3P16989 USP22-203ENST00000463692 355 ntTSL 33.56□□□□□ -1.844e-8■□□□□ 9.5
YBX3P16989 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC20.25■□□□□ 0.833e-7■□□□□ 9.5
YBX3P16989 CEP57L1-211ENST00000520610 1120 ntTSL 520.25■□□□□ 0.833e-7■□□□□ 9.5
YBX3P16989 CEP57L1-224ENST00000524064 819 ntTSL 517.65■□□□□ 0.423e-7■□□□□ 9.5
YBX3P16989 CEP57L1-210ENST00000519407 598 ntTSL 317.12■□□□□ 0.333e-7■□□□□ 9.5
YBX3P16989 CEP57L1-215ENST00000521503 446 ntTSL 417.12■□□□□ 0.333e-7■□□□□ 9.5
YBX3P16989 CEP57L1-220ENST00000522608 769 ntTSL 516.82■□□□□ 0.283e-7■□□□□ 9.5
YBX3P16989 CEP57L1-209ENST00000519286 965 ntTSL 516.09■□□□□ 0.173e-7■□□□□ 9.5
YBX3P16989 CEP57L1-204ENST00000407272 1947 ntTSL 5 BASIC14.66□□□□□ -0.063e-7■□□□□ 9.5
YBX3P16989 CEP57L1-219ENST00000522490 861 ntTSL 313.6□□□□□ -0.233e-7■□□□□ 9.5
YBX3P16989 CEP57L1-207ENST00000518853 813 ntTSL 313.4□□□□□ -0.263e-7■□□□□ 9.5
YBX3P16989 CEP57L1-222ENST00000523209 866 ntTSL 512.46□□□□□ -0.413e-7■□□□□ 9.5
YBX3P16989 CEP57L1-202ENST00000368968 1649 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.453e-7■□□□□ 9.5
YBX3P16989 CEP57L1-205ENST00000517392 2771 ntAPPRIS P3 TSL 2 BASIC11.2□□□□□ -0.623e-7■□□□□ 9.5
YBX3P16989 CEP57L1-214ENST00000521277 3832 ntTSL 2 BASIC8.69□□□□□ -1.023e-7■□□□□ 9.5
YBX3P16989 CEP57L1-212ENST00000520761 865 ntTSL 57.69□□□□□ -1.183e-7■□□□□ 9.5
YBX3P16989 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.483e-7■□□□□ 9.5
YBX3P16989 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.91□□□□□ -1.623e-7■□□□□ 9.5
YBX3P16989 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC4.88□□□□□ -1.633e-7■□□□□ 9.5
Retrieved 100 of 29,075 protein–RNA pairs in 169.1 ms