Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC16.41■□□□□ 0.22
VTNP04004 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.41■□□□□ 0.22
VTNP04004 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.41■□□□□ 0.22
VTNP04004 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
VTNP04004 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VTNP04004 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.41■□□□□ 0.22
VTNP04004 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.41■□□□□ 0.22
VTNP04004 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VTNP04004 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.41■□□□□ 0.22
VTNP04004 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.41■□□□□ 0.22
VTNP04004 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 AC006058.4-201ENST00000624016 1670 ntBASIC16.4■□□□□ 0.22
VTNP04004 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.4■□□□□ 0.22
VTNP04004 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.4■□□□□ 0.22
VTNP04004 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.4■□□□□ 0.22
VTNP04004 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.4■□□□□ 0.22
VTNP04004 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.4■□□□□ 0.22
VTNP04004 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.4■□□□□ 0.22
VTNP04004 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.4■□□□□ 0.22
VTNP04004 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.4■□□□□ 0.22
VTNP04004 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.4■□□□□ 0.22
VTNP04004 AC004923.1-202ENST00000642106 209 ntBASIC16.4■□□□□ 0.22
VTNP04004 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VTNP04004 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 AC013726.1-201ENST00000563747 2285 ntBASIC16.4■□□□□ 0.22
VTNP04004 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 ACE3P-201ENST00000423435 1973 ntBASIC16.4■□□□□ 0.22
VTNP04004 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.4■□□□□ 0.22
VTNP04004 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.4■□□□□ 0.22
VTNP04004 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VTNP04004 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
VTNP04004 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
VTNP04004 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.39■□□□□ 0.22
VTNP04004 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
VTNP04004 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.39■□□□□ 0.21
VTNP04004 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.39■□□□□ 0.21
VTNP04004 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VTNP04004 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.39■□□□□ 0.21
VTNP04004 TLE1P1-201ENST00000422965 589 ntBASIC16.39■□□□□ 0.21
VTNP04004 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.39■□□□□ 0.21
VTNP04004 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.39■□□□□ 0.21
VTNP04004 KLF2P1-201ENST00000447438 1042 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms