Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 EIF3FP3-201ENST00000434851 1086 ntBASIC15.02■□□□□ -0
TRIM39Q9HCM9 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 RPL7P3-201ENST00000441388 714 ntBASIC15.02■□□□□ -0
TRIM39Q9HCM9 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 AC022210.1-201ENST00000449856 793 ntBASIC15.02■□□□□ -0
TRIM39Q9HCM9 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 AP000812.2-201ENST00000538934 718 ntBASIC15.02■□□□□ -0
TRIM39Q9HCM9 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 RN7SL48P-201ENST00000579283 293 ntBASIC15.02■□□□□ -0
TRIM39Q9HCM9 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 AC006486.2-201ENST00000624246 2199 ntBASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 SNX18-202ENST00000343017 3140 ntBASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.02□□□□□ -0.01
TRIM39Q9HCM9 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 CNN2P8-201ENST00000421872 913 ntBASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 KLF2P4-201ENST00000451959 1225 ntBASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 AC104989.1-201ENST00000519711 778 ntBASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 AP005482.1-201ENST00000563722 1273 ntBASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 AC244669.2-201ENST00000612320 853 ntBASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 MIR6805-201ENST00000615055 62 ntBASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 MIR6775-201ENST00000617557 69 ntBASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.01□□□□□ -0.01
TRIM39Q9HCM9 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
TRIM39Q9HCM9 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRIM39Q9HCM9 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms