Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC17.24■□□□□ 0.35
USP28Q96RU2 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP28Q96RU2 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
USP28Q96RU2 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.24■□□□□ 0.35
USP28Q96RU2 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC17.24■□□□□ 0.35
USP28Q96RU2 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
USP28Q96RU2 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
USP28Q96RU2 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.23■□□□□ 0.35
USP28Q96RU2 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.23■□□□□ 0.35
USP28Q96RU2 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.23■□□□□ 0.35
USP28Q96RU2 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.23■□□□□ 0.35
USP28Q96RU2 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
USP28Q96RU2 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.23■□□□□ 0.35
USP28Q96RU2 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 EIF3FP3-201ENST00000434851 1086 ntBASIC17.23■□□□□ 0.35
USP28Q96RU2 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
USP28Q96RU2 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.23■□□□□ 0.35
USP28Q96RU2 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
USP28Q96RU2 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.23■□□□□ 0.35
USP28Q96RU2 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.23■□□□□ 0.35
USP28Q96RU2 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.23■□□□□ 0.35
USP28Q96RU2 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.23■□□□□ 0.35
USP28Q96RU2 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.23■□□□□ 0.35
USP28Q96RU2 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.23■□□□□ 0.35
USP28Q96RU2 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
USP28Q96RU2 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
USP28Q96RU2 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.23■□□□□ 0.35
USP28Q96RU2 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.23■□□□□ 0.35
USP28Q96RU2 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP28Q96RU2 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
USP28Q96RU2 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
USP28Q96RU2 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.22■□□□□ 0.35
USP28Q96RU2 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.22■□□□□ 0.35
USP28Q96RU2 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
USP28Q96RU2 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.22■□□□□ 0.35
USP28Q96RU2 AL442647.2-201ENST00000429864 857 ntBASIC17.22■□□□□ 0.35
USP28Q96RU2 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.22■□□□□ 0.35
USP28Q96RU2 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.22■□□□□ 0.35
USP28Q96RU2 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.22■□□□□ 0.35
USP28Q96RU2 AC092183.1-201ENST00000469884 875 ntBASIC17.22■□□□□ 0.35
USP28Q96RU2 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.22■□□□□ 0.35
USP28Q96RU2 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.22■□□□□ 0.35
USP28Q96RU2 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.22■□□□□ 0.35
USP28Q96RU2 AC092552.1-201ENST00000547243 906 ntBASIC17.22■□□□□ 0.35
USP28Q96RU2 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.22■□□□□ 0.35
USP28Q96RU2 AC093726.1-201ENST00000608064 963 ntBASIC17.22■□□□□ 0.35
USP28Q96RU2 AC008761.3-201ENST00000624803 892 ntBASIC17.22■□□□□ 0.35
USP28Q96RU2 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.22■□□□□ 0.35
USP28Q96RU2 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 MYO15B-237ENST00000642007 4893 ntBASIC17.22■□□□□ 0.35
USP28Q96RU2 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
USP28Q96RU2 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP28Q96RU2 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
USP28Q96RU2 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms