Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.82□□□□□ -0.04
CXCL12P48061 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC14.82□□□□□ -0.04
CXCL12P48061 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CXCL12P48061 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC14.82□□□□□ -0.04
CXCL12P48061 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC14.82□□□□□ -0.04
CXCL12P48061 AC107464.3-201ENST00000609172 737 ntBASIC14.82□□□□□ -0.04
CXCL12P48061 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 AL139384.1-201ENST00000612143 3047 ntBASIC14.82□□□□□ -0.04
CXCL12P48061 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 ZBED1P1-201ENST00000502364 1930 ntBASIC14.82□□□□□ -0.04
CXCL12P48061 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.82□□□□□ -0.04
CXCL12P48061 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.82□□□□□ -0.04
CXCL12P48061 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 NKILA-202ENST00000614771 2598 ntBASIC14.81□□□□□ -0.04
CXCL12P48061 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.81□□□□□ -0.04
CXCL12P48061 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.81□□□□□ -0.04
CXCL12P48061 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.81□□□□□ -0.04
CXCL12P48061 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
CXCL12P48061 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
CXCL12P48061 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.81□□□□□ -0.04
CXCL12P48061 AC114947.1-202ENST00000514136 344 ntBASIC14.81□□□□□ -0.04
CXCL12P48061 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CXCL12P48061 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CXCL12P48061 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 NUDT4P2-201ENST00000578341 546 ntBASIC14.81□□□□□ -0.04
CXCL12P48061 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC14.81□□□□□ -0.04
CXCL12P48061 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
CXCL12P48061 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CXCL12P48061 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CXCL12P48061 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
CXCL12P48061 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.81□□□□□ -0.04
CXCL12P48061 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.81□□□□□ -0.04
CXCL12P48061 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CXCL12P48061 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC14.81□□□□□ -0.04
CXCL12P48061 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.81□□□□□ -0.04
CXCL12P48061 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
CXCL12P48061 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CXCL12P48061 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CXCL12P48061 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL12P48061 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.8□□□□□ -0.04
CXCL12P48061 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL12P48061 HIST2H2BA-201ENST00000412169 381 ntBASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms