Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC11.75□□□□□ -0.53
CXCL1P09341 BX324167.2-201ENST00000623717 3316 ntBASIC11.75□□□□□ -0.53
CXCL1P09341 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC11.75□□□□□ -0.53
CXCL1P09341 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
CXCL1P09341 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 TP73-211ENST00000604074 4806 ntTSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 AC138969.2-201ENST00000532739 9932 ntBASIC11.74□□□□□ -0.53
CXCL1P09341 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 MED22-202ENST00000371999 987 ntTSL 3 BASIC11.74□□□□□ -0.53
CXCL1P09341 METTL26-205ENST00000397666 726 ntTSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 AC092474.2-201ENST00000424288 719 ntBASIC11.74□□□□□ -0.53
CXCL1P09341 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC11.74□□□□□ -0.53
CXCL1P09341 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC11.74□□□□□ -0.53
CXCL1P09341 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC11.74□□□□□ -0.53
CXCL1P09341 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC11.74□□□□□ -0.53
CXCL1P09341 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 TP73-213ENST00000604479 1623 ntTSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC11.74□□□□□ -0.53
CXCL1P09341 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC11.74□□□□□ -0.53
CXCL1P09341 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
CXCL1P09341 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
CXCL1P09341 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
CXCL1P09341 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC11.73□□□□□ -0.53
CXCL1P09341 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 RPS2P28-201ENST00000314255 741 ntBASIC11.73□□□□□ -0.53
CXCL1P09341 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC11.73□□□□□ -0.53
CXCL1P09341 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC11.73□□□□□ -0.53
CXCL1P09341 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC11.73□□□□□ -0.53
CXCL1P09341 SLC4A1APP2-201ENST00000424054 1259 ntBASIC11.73□□□□□ -0.53
CXCL1P09341 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC11.73□□□□□ -0.53
CXCL1P09341 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC11.73□□□□□ -0.53
CXCL1P09341 ZBTB45P2-201ENST00000452245 1531 ntBASIC11.73□□□□□ -0.53
CXCL1P09341 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC11.73□□□□□ -0.53
CXCL1P09341 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
CXCL1P09341 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC11.73□□□□□ -0.53
CXCL1P09341 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC11.73□□□□□ -0.53
CXCL1P09341 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
CXCL1P09341 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC11.73□□□□□ -0.53
CXCL1P09341 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms