Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SEMA3DO95025 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.52□□□□□ -0.08
SEMA3DO95025 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SEMA3DO95025 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.52□□□□□ -0.08
SEMA3DO95025 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.52□□□□□ -0.08
SEMA3DO95025 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.52□□□□□ -0.08
SEMA3DO95025 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.52□□□□□ -0.08
SEMA3DO95025 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SEMA3DO95025 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SEMA3DO95025 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.52□□□□□ -0.08
SEMA3DO95025 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SEMA3DO95025 KRT8P14-201ENST00000414254 1442 ntBASIC14.52□□□□□ -0.08
SEMA3DO95025 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SEMA3DO95025 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SEMA3DO95025 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SEMA3DO95025 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SEMA3DO95025 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SEMA3DO95025 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SEMA3DO95025 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SEMA3DO95025 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SEMA3DO95025 MIR661-201ENST00000384842 89 ntBASIC14.52□□□□□ -0.09
SEMA3DO95025 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
SEMA3DO95025 AL139094.1-201ENST00000405549 1188 ntBASIC14.52□□□□□ -0.09
SEMA3DO95025 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SEMA3DO95025 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.52□□□□□ -0.09
SEMA3DO95025 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SEMA3DO95025 API5-211ENST00000534695 560 ntTSL 5 BASIC14.52□□□□□ -0.09
SEMA3DO95025 AL359711.2-201ENST00000563105 872 ntBASIC14.52□□□□□ -0.09
SEMA3DO95025 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.52□□□□□ -0.09
SEMA3DO95025 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.52□□□□□ -0.09
SEMA3DO95025 AL603764.1-201ENST00000636452 321 ntBASIC14.52□□□□□ -0.09
SEMA3DO95025 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SEMA3DO95025 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SEMA3DO95025 AL157414.3-201ENST00000624276 1954 ntBASIC14.52□□□□□ -0.09
SEMA3DO95025 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SEMA3DO95025 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SEMA3DO95025 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
SEMA3DO95025 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SEMA3DO95025 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SEMA3DO95025 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SEMA3DO95025 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.52□□□□□ -0.09
SEMA3DO95025 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
SEMA3DO95025 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SEMA3DO95025 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SEMA3DO95025 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SEMA3DO95025 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SEMA3DO95025 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SEMA3DO95025 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.51□□□□□ -0.09
SEMA3DO95025 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.51□□□□□ -0.09
SEMA3DO95025 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 AC005840.4-201ENST00000541242 2494 ntBASIC14.51□□□□□ -0.09
SEMA3DO95025 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SEMA3DO95025 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.51□□□□□ -0.09
SEMA3DO95025 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 PIN1P1-201ENST00000412108 996 ntBASIC14.51□□□□□ -0.09
SEMA3DO95025 AC098850.1-201ENST00000419919 790 ntBASIC14.51□□□□□ -0.09
SEMA3DO95025 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 AC002472.2-201ENST00000442739 958 ntBASIC14.51□□□□□ -0.09
SEMA3DO95025 MYCLP2-201ENST00000449268 967 ntBASIC14.51□□□□□ -0.09
SEMA3DO95025 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.51□□□□□ -0.09
SEMA3DO95025 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.51□□□□□ -0.09
SEMA3DO95025 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.51□□□□□ -0.09
SEMA3DO95025 ENPP7P5-201ENST00000541031 1031 ntBASIC14.51□□□□□ -0.09
SEMA3DO95025 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.51□□□□□ -0.09
SEMA3DO95025 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.51□□□□□ -0.09
SEMA3DO95025 AC133539.2-201ENST00000604757 467 ntBASIC14.51□□□□□ -0.09
SEMA3DO95025 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 AC087386.2-201ENST00000623212 4637 ntBASIC14.51□□□□□ -0.09
SEMA3DO95025 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SEMA3DO95025 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SEMA3DO95025 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms