Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 RBM8B-201ENST00000555532 525 ntBASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 AC013726.1-201ENST00000563747 2285 ntBASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC87Q9NVE4 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 AC087481.3-201ENST00000602886 1894 ntBASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 AL365203.3-201ENST00000609742 2057 ntBASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 AC234644.1-201ENST00000406065 370 ntBASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 XBP1P1-201ENST00000436573 652 ntBASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 MIR4649-201ENST00000582839 64 ntBASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC87Q9NVE4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 AC018629.1-201ENST00000623381 1736 ntBASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 MIR1227-201ENST00000408484 88 ntBASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 KRT18P36-201ENST00000411618 1276 ntBASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 AC005357.2-202ENST00000590507 1060 ntBASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 AC007881.3-201ENST00000608897 607 ntBASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 AC092299.1-201ENST00000632679 757 ntBASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC87Q9NVE4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms