Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 TIMM17BP1-201ENST00000545713 516 ntBASIC16.35■□□□□ 0.21
CCDC42Q96M95 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 AC004461.2-201ENST00000629517 803 ntBASIC16.35■□□□□ 0.21
CCDC42Q96M95 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 AC092135.3-201ENST00000624151 1846 ntBASIC16.35■□□□□ 0.21
CCDC42Q96M95 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 AC126335.2-201ENST00000623362 4637 ntBASIC16.35■□□□□ 0.21
CCDC42Q96M95 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC42Q96M95 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC42Q96M95 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.34■□□□□ 0.21
CCDC42Q96M95 CNN2P11-201ENST00000429351 262 ntBASIC16.34■□□□□ 0.21
CCDC42Q96M95 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 BEND3P1-201ENST00000421591 1944 ntBASIC16.34■□□□□ 0.21
CCDC42Q96M95 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC16.34■□□□□ 0.21
CCDC42Q96M95 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC42Q96M95 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC42Q96M95 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.33■□□□□ 0.21
CCDC42Q96M95 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC42Q96M95 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC42Q96M95 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.33■□□□□ 0.21
CCDC42Q96M95 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 BX842568.4-201ENST00000421222 227 ntBASIC16.33■□□□□ 0.2
CCDC42Q96M95 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 AC073592.8-201ENST00000624126 511 ntBASIC16.33■□□□□ 0.2
CCDC42Q96M95 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC42Q96M95 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC42Q96M95 AC010327.5-201ENST00000586923 3061 ntBASIC16.33■□□□□ 0.2
CCDC42Q96M95 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms