Protein–RNA interactions for Protein: Q8IVU3

HERC6, Probable E3 ubiquitin-protein ligase HERC6, humanhuman

Predictions only

Length 1,022 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6Q8IVU3 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HERC6Q8IVU3 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.29■□□□□ 0.2
HERC6Q8IVU3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HERC6Q8IVU3 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HERC6Q8IVU3 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HERC6Q8IVU3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HERC6Q8IVU3 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HERC6Q8IVU3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HERC6Q8IVU3 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HERC6Q8IVU3 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 RN7SKP175-201ENST00000408472 289 ntBASIC16.28■□□□□ 0.2
HERC6Q8IVU3 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 AC073150.1-201ENST00000450406 1084 ntBASIC16.28■□□□□ 0.2
HERC6Q8IVU3 RN7SL8P-201ENST00000461771 266 ntBASIC16.28■□□□□ 0.2
HERC6Q8IVU3 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 RCC2P8-201ENST00000502779 1035 ntBASIC16.28■□□□□ 0.2
HERC6Q8IVU3 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 AC002472.3-201ENST00000640124 621 ntBASIC16.28■□□□□ 0.2
HERC6Q8IVU3 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 AC112504.1-201ENST00000623415 1841 ntBASIC16.28■□□□□ 0.2
HERC6Q8IVU3 AL603832.2-201ENST00000566195 2125 ntBASIC16.28■□□□□ 0.2
HERC6Q8IVU3 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HERC6Q8IVU3 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 DUX4L46-201ENST00000566845 751 ntBASIC16.27■□□□□ 0.2
HERC6Q8IVU3 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 AC087045.2-201ENST00000606279 1003 ntBASIC16.27■□□□□ 0.2
HERC6Q8IVU3 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HERC6Q8IVU3 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HERC6Q8IVU3 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.19
HERC6Q8IVU3 SHC1P1-201ENST00000425230 1745 ntBASIC16.27■□□□□ 0.19
HERC6Q8IVU3 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HERC6Q8IVU3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HERC6Q8IVU3 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms