Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 AL157414.3-201ENST00000624276 1954 ntBASIC11.59□□□□□ -0.55
HLA-DMBP28068 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 AC100757.3-201ENST00000622361 1406 ntBASIC11.59□□□□□ -0.55
HLA-DMBP28068 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
HLA-DMBP28068 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HLA-DMBP28068 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC11.58□□□□□ -0.55
HLA-DMBP28068 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.55
HLA-DMBP28068 BX640514.1-201ENST00000583223 1918 ntBASIC11.58□□□□□ -0.55
HLA-DMBP28068 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 AC018442.1-201ENST00000421439 2061 ntBASIC11.58□□□□□ -0.56
HLA-DMBP28068 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 TERF1P3-201ENST00000505638 1227 ntBASIC11.58□□□□□ -0.56
HLA-DMBP28068 SDHAP3-202ENST00000515467 728 ntBASIC11.58□□□□□ -0.56
HLA-DMBP28068 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 AC138761.1-201ENST00000584393 385 ntBASIC11.58□□□□□ -0.56
HLA-DMBP28068 AL590560.3-201ENST00000623350 461 ntBASIC11.58□□□□□ -0.56
HLA-DMBP28068 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
HLA-DMBP28068 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HLA-DMBP28068 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC005840.4-201ENST00000541242 2494 ntBASIC11.57□□□□□ -0.56
HLA-DMBP28068 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC236430.1-201ENST00000402231 743 ntBASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms