Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 KRT8P22-201ENST00000562317 1415 ntBASIC15.31■□□□□ 0.04
AP3B1O00203 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.31■□□□□ 0.04
AP3B1O00203 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
AP3B1O00203 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
AP3B1O00203 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3B1O00203 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
AP3B1O00203 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
AP3B1O00203 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 PMS2P2-201ENST00000425039 1128 ntBASIC15.3■□□□□ 0.04
AP3B1O00203 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.3■□□□□ 0.04
AP3B1O00203 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3B1O00203 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 ENPP7P5-201ENST00000541031 1031 ntBASIC15.3■□□□□ 0.04
AP3B1O00203 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.3■□□□□ 0.04
AP3B1O00203 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3B1O00203 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
AP3B1O00203 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
AP3B1O00203 MTHFR-210ENST00000641407 2387 ntBASIC15.3■□□□□ 0.04
AP3B1O00203 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
AP3B1O00203 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
AP3B1O00203 CTBP1-AS2-206ENST00000581398 5652 ntBASIC15.3■□□□□ 0.04
AP3B1O00203 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3B1O00203 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
AP3B1O00203 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3B1O00203 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
AP3B1O00203 AC005912.2-201ENST00000619492 2400 ntBASIC15.29■□□□□ 0.04
AP3B1O00203 AL122018.1-201ENST00000446607 2310 ntBASIC15.29■□□□□ 0.04
AP3B1O00203 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
AP3B1O00203 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
AP3B1O00203 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
AP3B1O00203 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.29■□□□□ 0.04
AP3B1O00203 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.29■□□□□ 0.04
AP3B1O00203 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.29■□□□□ 0.04
AP3B1O00203 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
AP3B1O00203 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.29■□□□□ 0.04
AP3B1O00203 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.29■□□□□ 0.04
AP3B1O00203 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms