Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KIAA1549Q9HCM3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
KIAA1549Q9HCM3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.72■□□□□ 0.91
KIAA1549Q9HCM3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
KIAA1549Q9HCM3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
KIAA1549Q9HCM3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KIAA1549Q9HCM3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KIAA1549Q9HCM3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
KIAA1549Q9HCM3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
KIAA1549Q9HCM3 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
KIAA1549Q9HCM3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.7■□□□□ 0.9
KIAA1549Q9HCM3 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.7■□□□□ 0.9
KIAA1549Q9HCM3 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.7■□□□□ 0.9
KIAA1549Q9HCM3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
KIAA1549Q9HCM3 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
KIAA1549Q9HCM3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
KIAA1549Q9HCM3 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
KIAA1549Q9HCM3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
KIAA1549Q9HCM3 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
KIAA1549Q9HCM3 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KIAA1549Q9HCM3 LINC00543-201ENST00000567234 1845 ntBASIC20.67■□□□□ 0.9
KIAA1549Q9HCM3 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KIAA1549Q9HCM3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
KIAA1549Q9HCM3 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.67■□□□□ 0.9
KIAA1549Q9HCM3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KIAA1549Q9HCM3 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
KIAA1549Q9HCM3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.66■□□□□ 0.9
KIAA1549Q9HCM3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 AL136116.3-201ENST00000402907 1138 ntBASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 AC110285.6-201ENST00000617652 491 ntBASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.65■□□□□ 0.9
KIAA1549Q9HCM3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
KIAA1549Q9HCM3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
KIAA1549Q9HCM3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KIAA1549Q9HCM3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KIAA1549Q9HCM3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.64■□□□□ 0.89
KIAA1549Q9HCM3 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.63■□□□□ 0.89
KIAA1549Q9HCM3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KIAA1549Q9HCM3 AC141586.4-201ENST00000624558 1573 ntBASIC20.62■□□□□ 0.89
KIAA1549Q9HCM3 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
KIAA1549Q9HCM3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.62■□□□□ 0.89
KIAA1549Q9HCM3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.62■□□□□ 0.89
KIAA1549Q9HCM3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
KIAA1549Q9HCM3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
KIAA1549Q9HCM3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
KIAA1549Q9HCM3 LINC01124-201ENST00000409786 2117 ntBASIC20.61■□□□□ 0.89
KIAA1549Q9HCM3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
KIAA1549Q9HCM3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.61■□□□□ 0.89
KIAA1549Q9HCM3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms