Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC23.77■■□□□ 1.4
PCDH9Q9HC56 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.77■■□□□ 1.4
PCDH9Q9HC56 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.77■■□□□ 1.4
PCDH9Q9HC56 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.77■■□□□ 1.4
PCDH9Q9HC56 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCDH9Q9HC56 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.77■■□□□ 1.4
PCDH9Q9HC56 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
PCDH9Q9HC56 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
PCDH9Q9HC56 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDH9Q9HC56 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
PCDH9Q9HC56 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.76■■□□□ 1.39
PCDH9Q9HC56 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDH9Q9HC56 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDH9Q9HC56 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDH9Q9HC56 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDH9Q9HC56 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDH9Q9HC56 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDH9Q9HC56 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
PCDH9Q9HC56 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.75■■□□□ 1.39
PCDH9Q9HC56 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
PCDH9Q9HC56 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.74■■□□□ 1.39
PCDH9Q9HC56 AC090877.2-201ENST00000558441 1738 ntBASIC23.74■■□□□ 1.39
PCDH9Q9HC56 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDH9Q9HC56 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDH9Q9HC56 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDH9Q9HC56 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.74■■□□□ 1.39
PCDH9Q9HC56 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDH9Q9HC56 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDH9Q9HC56 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDH9Q9HC56 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDH9Q9HC56 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
PCDH9Q9HC56 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
PCDH9Q9HC56 AC022616.5-201ENST00000518796 181 ntBASIC23.73■■□□□ 1.39
PCDH9Q9HC56 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.73■■□□□ 1.39
PCDH9Q9HC56 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDH9Q9HC56 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDH9Q9HC56 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
PCDH9Q9HC56 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.73■■□□□ 1.39
PCDH9Q9HC56 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.73■■□□□ 1.39
PCDH9Q9HC56 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDH9Q9HC56 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDH9Q9HC56 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDH9Q9HC56 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
PCDH9Q9HC56 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDH9Q9HC56 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDH9Q9HC56 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
PCDH9Q9HC56 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDH9Q9HC56 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDH9Q9HC56 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.7■■□□□ 1.39
PCDH9Q9HC56 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.7■■□□□ 1.39
PCDH9Q9HC56 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDH9Q9HC56 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDH9Q9HC56 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
PCDH9Q9HC56 KRT8P33-201ENST00000508125 1423 ntBASIC23.7■■□□□ 1.38
PCDH9Q9HC56 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDH9Q9HC56 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC23.7■■□□□ 1.38
PCDH9Q9HC56 MIR4508-201ENST00000584178 70 ntBASIC23.7■■□□□ 1.38
PCDH9Q9HC56 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.7■■□□□ 1.38
PCDH9Q9HC56 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.7■■□□□ 1.38
PCDH9Q9HC56 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDH9Q9HC56 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PCDH9Q9HC56 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDH9Q9HC56 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDH9Q9HC56 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDH9Q9HC56 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDH9Q9HC56 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDH9Q9HC56 AC103834.1-201ENST00000520383 144 ntBASIC23.69■■□□□ 1.38
PCDH9Q9HC56 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.69■■□□□ 1.38
PCDH9Q9HC56 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
PCDH9Q9HC56 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDH9Q9HC56 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.68■■□□□ 1.38
PCDH9Q9HC56 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.68■■□□□ 1.38
PCDH9Q9HC56 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDH9Q9HC56 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
PCDH9Q9HC56 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.68■■□□□ 1.38
PCDH9Q9HC56 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDH9Q9HC56 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.67■■□□□ 1.38
PCDH9Q9HC56 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PCDH9Q9HC56 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.67■■□□□ 1.38
PCDH9Q9HC56 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDH9Q9HC56 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.67■■□□□ 1.38
PCDH9Q9HC56 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.66■■□□□ 1.38
PCDH9Q9HC56 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PCDH9Q9HC56 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDH9Q9HC56 YBX1P4-201ENST00000392794 808 ntBASIC23.66■■□□□ 1.38
PCDH9Q9HC56 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDH9Q9HC56 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PCDH9Q9HC56 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDH9Q9HC56 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms