Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CDX2Q99626 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CDX2Q99626 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CDX2Q99626 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC24.63■■□□□ 1.53
CDX2Q99626 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
CDX2Q99626 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
CDX2Q99626 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CDX2Q99626 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC24.62■■□□□ 1.53
CDX2Q99626 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CDX2Q99626 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.62■■□□□ 1.53
CDX2Q99626 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CDX2Q99626 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CDX2Q99626 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CDX2Q99626 AC142472.1-201ENST00000612013 1741 ntBASIC24.61■■□□□ 1.53
CDX2Q99626 AL355802.2-201ENST00000402069 882 ntBASIC24.61■■□□□ 1.53
CDX2Q99626 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC24.61■■□□□ 1.53
CDX2Q99626 KRT18P14-201ENST00000534205 1250 ntBASIC24.61■■□□□ 1.53
CDX2Q99626 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.6■■□□□ 1.53
CDX2Q99626 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.6■■□□□ 1.53
CDX2Q99626 SNX3-202ENST00000349379 890 ntTSL 2 BASIC24.6■■□□□ 1.53
CDX2Q99626 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC24.6■■□□□ 1.53
CDX2Q99626 CDCA4P2-201ENST00000441182 718 ntBASIC24.6■■□□□ 1.53
CDX2Q99626 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.6■■□□□ 1.53
CDX2Q99626 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
CDX2Q99626 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CDX2Q99626 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC24.59■■□□□ 1.53
CDX2Q99626 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CDX2Q99626 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CDX2Q99626 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC24.59■■□□□ 1.53
CDX2Q99626 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC24.59■■□□□ 1.53
CDX2Q99626 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CDX2Q99626 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CDX2Q99626 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CDX2Q99626 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC24.58■■□□□ 1.53
CDX2Q99626 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CDX2Q99626 AC241377.3-202ENST00000626088 1088 ntBASIC24.58■■□□□ 1.53
CDX2Q99626 AC241585.3-202ENST00000628937 1088 ntBASIC24.58■■□□□ 1.53
CDX2Q99626 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
CDX2Q99626 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
CDX2Q99626 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC24.57■■□□□ 1.52
CDX2Q99626 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC24.57■■□□□ 1.52
CDX2Q99626 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.57■■□□□ 1.52
CDX2Q99626 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
CDX2Q99626 AC006455.2-201ENST00000429931 906 ntBASIC24.57■■□□□ 1.52
CDX2Q99626 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.57■■□□□ 1.52
CDX2Q99626 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.57■■□□□ 1.52
CDX2Q99626 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
CDX2Q99626 AC073111.5-205ENST00000641717 521 ntBASIC24.57■■□□□ 1.52
CDX2Q99626 AC009102.2-201ENST00000606772 1639 ntBASIC24.57■■□□□ 1.52
CDX2Q99626 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
CDX2Q99626 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CDX2Q99626 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CDX2Q99626 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.56■■□□□ 1.52
CDX2Q99626 PPP1R14BP3-201ENST00000509033 445 ntBASIC24.56■■□□□ 1.52
CDX2Q99626 MIR3181-201ENST00000578512 73 ntBASIC24.56■■□□□ 1.52
CDX2Q99626 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC24.56■■□□□ 1.52
CDX2Q99626 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CDX2Q99626 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CDX2Q99626 TERF1P2-201ENST00000583350 1212 ntBASIC24.55■■□□□ 1.52
CDX2Q99626 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CDX2Q99626 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC24.55■■□□□ 1.52
CDX2Q99626 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CDX2Q99626 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
CDX2Q99626 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
CDX2Q99626 TSPY20P-201ENST00000450910 630 ntBASIC24.54■■□□□ 1.52
CDX2Q99626 CD99P1-205ENST00000527459 561 ntBASIC24.54■■□□□ 1.52
CDX2Q99626 AC012414.1-201ENST00000556676 535 ntBASIC24.54■■□□□ 1.52
CDX2Q99626 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.54■■□□□ 1.52
CDX2Q99626 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC24.54■■□□□ 1.52
CDX2Q99626 AL109923.1-201ENST00000618799 583 ntBASIC24.54■■□□□ 1.52
CDX2Q99626 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.54■■□□□ 1.52
CDX2Q99626 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
CDX2Q99626 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.53■■□□□ 1.52
CDX2Q99626 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC24.53■■□□□ 1.52
CDX2Q99626 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CDX2Q99626 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
CDX2Q99626 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDX2Q99626 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDX2Q99626 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDX2Q99626 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDX2Q99626 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.52■■□□□ 1.52
CDX2Q99626 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDX2Q99626 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC24.52■■□□□ 1.52
CDX2Q99626 AC006015.1-201ENST00000429970 570 ntBASIC24.52■■□□□ 1.52
CDX2Q99626 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC24.52■■□□□ 1.52
CDX2Q99626 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC24.52■■□□□ 1.52
CDX2Q99626 AICDA-202ENST00000537228 667 ntTSL 5 BASIC24.52■■□□□ 1.52
CDX2Q99626 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC24.52■■□□□ 1.52
CDX2Q99626 AL354811.1-201ENST00000610286 706 ntBASIC24.52■■□□□ 1.52
CDX2Q99626 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC24.52■■□□□ 1.52
CDX2Q99626 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDX2Q99626 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDX2Q99626 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDX2Q99626 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
CDX2Q99626 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.51■■□□□ 1.51
CDX2Q99626 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CDX2Q99626 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
CDX2Q99626 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
CDX2Q99626 AC026185.1-201ENST00000445748 174 ntBASIC24.51■■□□□ 1.51
CDX2Q99626 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC24.51■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms