Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
VPS52Q8N1B4 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
VPS52Q8N1B4 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
VPS52Q8N1B4 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
VPS52Q8N1B4 UNC93B3-201ENST00000308076 687 ntBASIC24.84■■□□□ 1.57
VPS52Q8N1B4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.84■■□□□ 1.57
VPS52Q8N1B4 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC24.84■■□□□ 1.57
VPS52Q8N1B4 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
VPS52Q8N1B4 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.83■■□□□ 1.57
VPS52Q8N1B4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.82■■□□□ 1.56
VPS52Q8N1B4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
VPS52Q8N1B4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.82■■□□□ 1.56
VPS52Q8N1B4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.82■■□□□ 1.56
VPS52Q8N1B4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.82■■□□□ 1.56
VPS52Q8N1B4 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
VPS52Q8N1B4 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
VPS52Q8N1B4 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
VPS52Q8N1B4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC24.81■■□□□ 1.56
VPS52Q8N1B4 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
VPS52Q8N1B4 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
VPS52Q8N1B4 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
VPS52Q8N1B4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC24.81■■□□□ 1.56
VPS52Q8N1B4 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
VPS52Q8N1B4 SRD5A1P1-201ENST00000442297 786 ntBASIC24.81■■□□□ 1.56
VPS52Q8N1B4 AC142381.2-201ENST00000566120 298 ntBASIC24.81■■□□□ 1.56
VPS52Q8N1B4 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
VPS52Q8N1B4 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
VPS52Q8N1B4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
VPS52Q8N1B4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
VPS52Q8N1B4 AL136162.1-201ENST00000607711 1078 ntBASIC24.8■■□□□ 1.56
VPS52Q8N1B4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC24.8■■□□□ 1.56
VPS52Q8N1B4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC24.8■■□□□ 1.56
VPS52Q8N1B4 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
VPS52Q8N1B4 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
VPS52Q8N1B4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.79■■□□□ 1.56
VPS52Q8N1B4 AC004448.1-201ENST00000458332 883 ntBASIC24.79■■□□□ 1.56
VPS52Q8N1B4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
VPS52Q8N1B4 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.79■■□□□ 1.56
VPS52Q8N1B4 ZNRF2P3-201ENST00000424200 374 ntBASIC24.78■■□□□ 1.56
VPS52Q8N1B4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC24.78■■□□□ 1.56
VPS52Q8N1B4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
VPS52Q8N1B4 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC24.78■■□□□ 1.56
VPS52Q8N1B4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
VPS52Q8N1B4 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
VPS52Q8N1B4 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
VPS52Q8N1B4 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
VPS52Q8N1B4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.76■■□□□ 1.55
VPS52Q8N1B4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.76■■□□□ 1.55
VPS52Q8N1B4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
VPS52Q8N1B4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
VPS52Q8N1B4 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
VPS52Q8N1B4 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
VPS52Q8N1B4 AC135279.3-201ENST00000610945 1311 ntBASIC24.76■■□□□ 1.55
VPS52Q8N1B4 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
VPS52Q8N1B4 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
VPS52Q8N1B4 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
VPS52Q8N1B4 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
VPS52Q8N1B4 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
VPS52Q8N1B4 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
VPS52Q8N1B4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC24.75■■□□□ 1.55
VPS52Q8N1B4 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
VPS52Q8N1B4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
VPS52Q8N1B4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
VPS52Q8N1B4 AL031432.3-201ENST00000607698 485 ntBASIC24.74■■□□□ 1.55
VPS52Q8N1B4 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
VPS52Q8N1B4 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
VPS52Q8N1B4 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 GATM-206ENST00000558336 1522 ntTSL 2 BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 SUDS3P1-201ENST00000505831 966 ntBASIC24.73■■□□□ 1.55
VPS52Q8N1B4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC24.73■■□□□ 1.55
VPS52Q8N1B4 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
VPS52Q8N1B4 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.72■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms