Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SOX3P41225 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SOX3P41225 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SOX3P41225 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SOX3P41225 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SOX3P41225 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SOX3P41225 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.53■■□□□ 1.04
SOX3P41225 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SOX3P41225 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.53■■□□□ 1.04
SOX3P41225 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SOX3P41225 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SOX3P41225 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SOX3P41225 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.52■■□□□ 1.04
SOX3P41225 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
SOX3P41225 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
SOX3P41225 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SOX3P41225 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SOX3P41225 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.52■■□□□ 1.03
SOX3P41225 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.52■■□□□ 1.03
SOX3P41225 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SOX3P41225 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SOX3P41225 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SOX3P41225 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SOX3P41225 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.51■■□□□ 1.03
SOX3P41225 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
SOX3P41225 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SOX3P41225 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.51■■□□□ 1.03
SOX3P41225 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
SOX3P41225 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SOX3P41225 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.5■■□□□ 1.03
SOX3P41225 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SOX3P41225 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SOX3P41225 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.5■■□□□ 1.03
SOX3P41225 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SOX3P41225 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.5■■□□□ 1.03
SOX3P41225 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.5■■□□□ 1.03
SOX3P41225 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SOX3P41225 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SOX3P41225 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SOX3P41225 AF131216.4-201ENST00000638924 1588 ntBASIC21.49■■□□□ 1.03
SOX3P41225 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
SOX3P41225 LINC01124-201ENST00000409786 2117 ntBASIC21.49■■□□□ 1.03
SOX3P41225 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SOX3P41225 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.49■■□□□ 1.03
SOX3P41225 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SOX3P41225 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SOX3P41225 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SOX3P41225 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
SOX3P41225 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SOX3P41225 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SOX3P41225 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.48■■□□□ 1.03
SOX3P41225 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.48■■□□□ 1.03
SOX3P41225 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SOX3P41225 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SOX3P41225 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SOX3P41225 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SOX3P41225 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SOX3P41225 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SOX3P41225 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.48■■□□□ 1.03
SOX3P41225 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SOX3P41225 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.47■■□□□ 1.03
SOX3P41225 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.47■■□□□ 1.03
SOX3P41225 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.47■■□□□ 1.03
SOX3P41225 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.47■■□□□ 1.03
SOX3P41225 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SOX3P41225 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
SOX3P41225 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
SOX3P41225 AC012676.1-201ENST00000574705 1949 ntBASIC21.47■■□□□ 1.03
SOX3P41225 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SOX3P41225 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SOX3P41225 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SOX3P41225 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.46■■□□□ 1.03
SOX3P41225 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SOX3P41225 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SOX3P41225 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SOX3P41225 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SOX3P41225 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.46■■□□□ 1.03
SOX3P41225 TSPY9P-201ENST00000440215 945 ntBASIC21.46■■□□□ 1.03
SOX3P41225 TSPY11P-201ENST00000442607 1045 ntBASIC21.46■■□□□ 1.03
SOX3P41225 AL356441.2-201ENST00000443009 864 ntBASIC21.46■■□□□ 1.03
SOX3P41225 AC092028.1-203ENST00000608262 953 ntBASIC21.46■■□□□ 1.03
SOX3P41225 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
SOX3P41225 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SOX3P41225 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.03
SOX3P41225 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SOX3P41225 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.45■■□□□ 1.02
SOX3P41225 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.45■■□□□ 1.02
SOX3P41225 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SOX3P41225 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.45■■□□□ 1.02
SOX3P41225 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.45■■□□□ 1.02
SOX3P41225 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
SOX3P41225 UNC93B8-201ENST00000511903 705 ntBASIC21.45■■□□□ 1.02
SOX3P41225 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SOX3P41225 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SOX3P41225 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SOX3P41225 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SOX3P41225 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SOX3P41225 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SOX3P41225 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SOX3P41225 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms