Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	MATALPHA1	YCR040W	528 nt		5.36	□□□□□ -1.55
SHP1	P34223	YLR296W	YLR296W	327 nt		5.36	□□□□□ -1.55
SHP1	P34223	ISU2	YOR226C	471 nt		5.36	□□□□□ -1.55
SHP1	P34223	HRR25	YPL204W	1485 nt		5.36	□□□□□ -1.55
SHP1	P34223	MMT2	YPL224C	1455 nt		5.36	□□□□□ -1.55
SHP1	P34223	ALD6	YPL061W	1503 nt		5.36	□□□□□ -1.55
SHP1	P34223	HPF1	YOL155C	2904 nt		5.36	□□□□□ -1.55
SHP1	P34223	SRP101	YDR292C	1866 nt		5.35	□□□□□ -1.55
SHP1	P34223	CST6	YIL036W	1764 nt		5.35	□□□□□ -1.55
SHP1	P34223	IMA2	YOL157C	1770 nt		5.35	□□□□□ -1.55
SHP1	P34223	CHL4	YDR254W	1377 nt		5.35	□□□□□ -1.55
SHP1	P34223	COX18	YGR062C	951 nt		5.35	□□□□□ -1.55
SHP1	P34223	CTR2	YHR175W	570 nt		5.35	□□□□□ -1.55
SHP1	P34223	YNL057W	YNL057W	333 nt		5.35	□□□□□ -1.55
SHP1	P34223	TIP41	YPR040W	1071 nt		5.35	□□□□□ -1.55
SHP1	P34223	MRI1	YPR118W	1236 nt		5.35	□□□□□ -1.55
SHP1	P34223	PDB1	YBR221C	1101 nt		5.35	□□□□□ -1.55
SHP1	P34223	ADE3	YGR204W	2841 nt		5.35	□□□□□ -1.55
SHP1	P34223	RNR3	YIL066C	2610 nt		5.35	□□□□□ -1.55
SHP1	P34223	VHS1	YDR247W	1386 nt		5.34	□□□□□ -1.55
SHP1	P34223	RTT103	YDR289C	1230 nt		5.34	□□□□□ -1.55
SHP1	P34223	PXR1	YGR280C	816 nt		5.34	□□□□□ -1.55
SHP1	P34223	XPT1	YJR133W	630 nt		5.34	□□□□□ -1.55
SHP1	P34223	RRT7	YLL030C	342 nt		5.34	□□□□□ -1.55
SHP1	P34223	YNL174W	YNL174W	573 nt		5.34	□□□□□ -1.55
SHP1	P34223	PDR10	YOR328W	4695 nt		5.34	□□□□□ -1.56
SHP1	P34223	LPL1	YOR059C	1353 nt		5.33	□□□□□ -1.56
SHP1	P34223	YKR041W	YKR041W	753 nt		5.33	□□□□□ -1.56
SHP1	P34223	APS1	YLR170C	471 nt		5.33	□□□□□ -1.56
SHP1	P34223	DOM34	YNL001W	1161 nt		5.33	□□□□□ -1.56
SHP1	P34223	POR1	YNL055C	852 nt		5.33	□□□□□ -1.56
SHP1	P34223	YNL134C	YNL134C	1131 nt		5.33	□□□□□ -1.56
SHP1	P34223	SCP1	YOR367W	603 nt		5.33	□□□□□ -1.56
SHP1	P34223	SEC18	YBR080C	2277 nt		5.33	□□□□□ -1.56
SHP1	P34223	ERG4	YGL012W	1422 nt		5.32	□□□□□ -1.56
SHP1	P34223	ROG3	YFR022W	2202 nt		5.32	□□□□□ -1.56
SHP1	P34223	DBP9	YLR276C	1785 nt		5.32	□□□□□ -1.56
SHP1	P34223	YPL245W	YPL245W	1365 nt		5.32	□□□□□ -1.56
SHP1	P34223	VBA1	YMR088C	1689 nt		5.32	□□□□□ -1.56
SHP1	P34223	YDR053W	YDR053W	396 nt		5.32	□□□□□ -1.56
SHP1	P34223	NMA1	YLR328W	1206 nt		5.32	□□□□□ -1.56
SHP1	P34223	TRM10	YOL093W	882 nt		5.32	□□□□□ -1.56
SHP1	P34223	ETT1	YOR051C	1239 nt		5.32	□□□□□ -1.56
SHP1	P34223	PEP4	YPL154C	1218 nt		5.32	□□□□□ -1.56
SHP1	P34223	VTH1	YIL173W	4650 nt		5.32	□□□□□ -1.56
SHP1	P34223	VTH2	YJL222W	4650 nt		5.32	□□□□□ -1.56
SHP1	P34223	FLC3	YGL139W	2409 nt		5.31	□□□□□ -1.56
SHP1	P34223	YGL072C	YGL072C	360 nt		5.31	□□□□□ -1.56
SHP1	P34223	ISY1	YJR050W	708 nt		5.31	□□□□□ -1.56
SHP1	P34223	YKR073C	YKR073C	321 nt		5.31	□□□□□ -1.56
SHP1	P34223	TIF5	YPR041W	1218 nt		5.31	□□□□□ -1.56
SHP1	P34223	ARH1	YDR376W	1482 nt		5.31	□□□□□ -1.56
SHP1	P34223	ACC1	YNR016C	6702 nt		5.31	□□□□□ -1.56
SHP1	P34223	ARN1	YHL040C	1884 nt		5.3	□□□□□ -1.56
SHP1	P34223	SFB3	YHR098C	2790 nt		5.3	□□□□□ -1.56
SHP1	P34223	SWI3	YJL176C	2478 nt		5.3	□□□□□ -1.56
SHP1	P34223	LYS5	YGL154C	819 nt		5.3	□□□□□ -1.56
SHP1	P34223	SPC42	YKL042W	1092 nt		5.3	□□□□□ -1.56
SHP1	P34223	PML1	YLR016C	615 nt		5.3	□□□□□ -1.56
SHP1	P34223	TRP3	YKL211C	1455 nt		5.29	□□□□□ -1.56
SHP1	P34223	VCX1	YDL128W	1236 nt		5.29	□□□□□ -1.56
SHP1	P34223	MAP2	YBL091C	1266 nt		5.29	□□□□□ -1.56
SHP1	P34223	ATG14	YBR128C	1035 nt		5.29	□□□□□ -1.56
SHP1	P34223	ARB1	YER036C	1833 nt		5.29	□□□□□ -1.56
SHP1	P34223	PUS1	YPL212C	1635 nt		5.29	□□□□□ -1.56
SHP1	P34223	YEL077C	YEL077C	3834 nt		5.29	□□□□□ -1.56
SHP1	P34223	BRE2	YLR015W	1518 nt		5.28	□□□□□ -1.56
SHP1	P34223	VMS1	YDR049W	1899 nt		5.28	□□□□□ -1.56
SHP1	P34223	CUE2	YKL090W	1332 nt		5.28	□□□□□ -1.56
SHP1	P34223	GRS1	YBR121C	2004 nt		5.28	□□□□□ -1.56
SHP1	P34223	DDC1	YPL194W	1839 nt		5.28	□□□□□ -1.56
SHP1	P34223	PRP31	YGR091W	1485 nt		5.28	□□□□□ -1.56
SHP1	P34223	TAF10	YDR167W	621 nt		5.28	□□□□□ -1.56
SHP1	P34223	UPS3	YDR185C	540 nt		5.28	□□□□□ -1.56
SHP1	P34223	YER147C-A	YER147C-A	411 nt		5.28	□□□□□ -1.56
SHP1	P34223	ACP1	YKL192C	378 nt		5.28	□□□□□ -1.56
SHP1	P34223	YAR023C	YAR023C	540 nt		5.28	□□□□□ -1.56
SHP1	P34223	MTF1	YMR228W	1026 nt		5.28	□□□□□ -1.56
SHP1	P34223	NAT5	YOR253W	531 nt		5.28	□□□□□ -1.56
SHP1	P34223	MUM3	YOR298W	1440 nt		5.28	□□□□□ -1.56
SHP1	P34223	GMC1	YDR506C	1827 nt		5.27	□□□□□ -1.57
SHP1	P34223	YJR124C	YJR124C	1347 nt		5.27	□□□□□ -1.57
SHP1	P34223	YDR132C	YDR132C	1488 nt		5.27	□□□□□ -1.57
SHP1	P34223	TNA1	YGR260W	1605 nt		5.27	□□□□□ -1.57
SHP1	P34223	PCL6	YER059W	1263 nt		5.27	□□□□□ -1.57
SHP1	P34223	SOH1	YGL127C	384 nt		5.27	□□□□□ -1.57
SHP1	P34223	SPO12	YHR152W	522 nt		5.27	□□□□□ -1.57
SHP1	P34223	DSE3	YOR264W	1293 nt		5.27	□□□□□ -1.57
SHP1	P34223	GSY2	YLR258W	2118 nt		5.27	□□□□□ -1.57
SHP1	P34223	BUD7	YOR299W	2241 nt		5.27	□□□□□ -1.57
SHP1	P34223	SIF2	YBR103W	1608 nt		5.26	□□□□□ -1.57
SHP1	P34223	PUT1	YLR142W	1431 nt		5.26	□□□□□ -1.57
SHP1	P34223	GUP2	YPL189W	1830 nt		5.26	□□□□□ -1.57
SHP1	P34223	TRS23	YDR246W	660 nt		5.26	□□□□□ -1.57
SHP1	P34223	YAR019W-A	YAR019W-A	333 nt		5.26	□□□□□ -1.57
SHP1	P34223	PDC1	YLR044C	1692 nt		5.26	□□□□□ -1.57
SHP1	P34223	PMT2	YAL023C	2280 nt		5.26	□□□□□ -1.57
SHP1	P34223	MMR1	YLR190W	1476 nt		5.26	□□□□□ -1.57
SHP1	P34223	RAM1	YDL090C	1296 nt		5.25	□□□□□ -1.57
SHP1	P34223	AIF1	YNR074C	1137 nt		5.25	□□□□□ -1.57

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