RNA–Protein interactions for RNA: YHR098C

SFB3, Transcript of Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat, yeastyeast

Gene SFB3, Length 2,790 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SFB3YHR098C DRS1P32892 752 aaKnown RBP10.08□□□□□ -0.8
SFB3YHR098C TFA1P36100 482 aa9.61□□□□□ -0.87
SFB3YHR098C BFR2Q06631 534 aaKnown RBP9.13□□□□□ -0.95
SFB3YHR098C MTC1P47018 478 aaKnown RBP9.05□□□□□ -0.96
SFB3YHR098C RQC2Q12532 1038 aaKnown RBP8.84□□□□□ -0.99
SFB3YHR098C TAF7Q05021 590 aa8.84□□□□□ -1
SFB3YHR098C AVT3P36062 692 aa8.71□□□□□ -1.01
SFB3YHR098C SPA2P23201 1466 aaKnown RBP8.54□□□□□ -1.04
SFB3YHR098C SGS1P35187 1447 aa8.42□□□□□ -1.06
SFB3YHR098C SSN2P38931 1420 aa8.4□□□□□ -1.06
SFB3YHR098C NOP2P40991 618 aaKnown RBP8.33□□□□□ -1.08
SFB3YHR098C DMA1P38823 416 aa8.29□□□□□ -1.08
SFB3YHR098C DIP2Q12220 943 aaPredicted RBP8.26□□□□□ -1.09
SFB3YHR098C SKI3P17883 1432 aaKnown RBP8.24□□□□□ -1.09
SFB3YHR098C NSR1P27476 414 aaKnown RBP RIP-Chip data8.18□□□□□ -1.1not detected
SFB3YHR098C LEO1P38439 464 aa8.12□□□□□ -1.11
SFB3YHR098C INO80P53115 1489 aa8□□□□□ -1.13
SFB3YHR098C ABP1P15891 592 aaKnown RBP7.93□□□□□ -1.14
SFB3YHR098C MMS22Q06164 1454 aa7.87□□□□□ -1.15
SFB3YHR098C EBP2P36049 427 aaKnown RBP7.82□□□□□ -1.16
SFB3YHR098C CHD1P32657 1468 aa7.82□□□□□ -1.16
SFB3YHR098C CAB3P36076 571 aa7.82□□□□□ -1.16
SFB3YHR098C RSE1Q04693 1361 aaKnown RBP7.81□□□□□ -1.16
SFB3YHR098C UFD4P33202 1483 aa7.76□□□□□ -1.17
SFB3YHR098C TCB3Q03640 1545 aaKnown RBP7.74□□□□□ -1.17
SFB3YHR098C XRN1P22147 1528 aaKnown RBP7.73□□□□□ -1.17
SFB3YHR098C YPR148CQ06523 435 aa7.72□□□□□ -1.17
SFB3YHR098C ENP1P38333 483 aaKnown RBP7.7□□□□□ -1.18
SFB3YHR098C IFH1P39520 1085 aa7.7□□□□□ -1.18
SFB3YHR098C LEU3P08638 886 aa7.69□□□□□ -1.18
SFB3YHR098C SAS10Q12136 610 aaPredicted RBP7.68□□□□□ -1.18
SFB3YHR098C MON2P48563 1636 aaPredicted RBP7.64□□□□□ -1.19
SFB3YHR098C TRM732Q03496 1420 aa7.64□□□□□ -1.19
SFB3YHR098C SPP41P38904 1435 aa7.6□□□□□ -1.19
SFB3YHR098C HSL1P34244 1518 aa7.58□□□□□ -1.2
SFB3YHR098C STH1P32597 1359 aa7.58□□□□□ -1.2
SFB3YHR098C ORC1P54784 914 aaPredicted RBP7.57□□□□□ -1.2
SFB3YHR098C SPT7P35177 1332 aa7.56□□□□□ -1.2
SFB3YHR098C TY1B-DR4Q07793 1604 aa7.56□□□□□ -1.2
SFB3YHR098C DMA2P53924 522 aa7.56□□□□□ -1.2
SFB3YHR098C IKI3Q06706 1349 aaKnown RBP7.55□□□□□ -1.2
SFB3YHR098C IOC4Q04213 475 aa7.55□□□□□ -1.2
SFB3YHR098C MYO2P19524 1574 aaKnown RBP7.55□□□□□ -1.2
SFB3YHR098C POL5P39985 1022 aaKnown RBP7.54□□□□□ -1.2
SFB3YHR098C SPT6P23615 1451 aaKnown RBP7.52□□□□□ -1.21
SFB3YHR098C PTP3P40048 928 aa7.5□□□□□ -1.21
SFB3YHR098C THO2P53552 1597 aaKnown RBP7.5□□□□□ -1.21
SFB3YHR098C STU1P38198 1513 aa7.49□□□□□ -1.21
SFB3YHR098C HIR3P47171 1648 aa7.49□□□□□ -1.21
SFB3YHR098C SSM4P40318 1319 aa7.49□□□□□ -1.21
SFB3YHR098C SIS2P36024 562 aa7.48□□□□□ -1.21
SFB3YHR098C PRS1P32895 427 aaKnown RBP7.48□□□□□ -1.21
SFB3YHR098C REV3P14284 1504 aa7.48□□□□□ -1.21
SFB3YHR098C ECM5Q03214 1411 aa7.47□□□□□ -1.21
SFB3YHR098C BPT1P14772 1559 aa7.45□□□□□ -1.22
SFB3YHR098C SSK2P53599 1579 aa7.45□□□□□ -1.22
SFB3YHR098C NUP170P38181 1502 aa7.44□□□□□ -1.22
SFB3YHR098C SEC3P33332 1336 aaKnown RBP7.44□□□□□ -1.22
SFB3YHR098C PDR10P51533 1564 aa7.44□□□□□ -1.22
SFB3YHR098C SIN3P22579 1536 aa7.43□□□□□ -1.22
SFB3YHR098C SCC2Q04002 1493 aa7.43□□□□□ -1.22
SFB3YHR098C TAF2P23255 1407 aa7.42□□□□□ -1.22
SFB3YHR098C NAP1P25293 417 aaKnown RBP7.42□□□□□ -1.22
SFB3YHR098C YTA7P40340 1379 aa7.39□□□□□ -1.23
SFB3YHR098C RTT106P40161 455 aa7.39□□□□□ -1.23
SFB3YHR098C POL1P13382 1468 aa7.39□□□□□ -1.23
SFB3YHR098C URN1Q06525 465 aaKnown RBP7.38□□□□□ -1.23
SFB3YHR098C CFT1Q06632 1357 aaKnown RBP7.37□□□□□ -1.23
SFB3YHR098C IME2P32581 645 aa7.37□□□□□ -1.23
SFB3YHR098C MLP2P40457 1679 aa7.37□□□□□ -1.23
SFB3YHR098C ESP1Q03018 1630 aa7.36□□□□□ -1.23
SFB3YHR098C CLC1P17891 233 aa7.36□□□□□ -1.23
SFB3YHR098C PEP1P32319 1579 aa7.35□□□□□ -1.23
SFB3YHR098C BUD4P47136 1447 aa7.34□□□□□ -1.23
SFB3YHR098C TCB2P48231 1178 aa7.34□□□□□ -1.23
SFB3YHR098C YFR016CP43597 1233 aaKnown RBP7.31□□□□□ -1.24
SFB3YHR098C SRB8P25648 1427 aa7.31□□□□□ -1.24
SFB3YHR098C PAN1P32521 1480 aa7.3□□□□□ -1.24
SFB3YHR098C OPY1P38271 328 aa7.29□□□□□ -1.24
SFB3YHR098C RIM101P33400 625 aa7.28□□□□□ -1.24
SFB3YHR098C RLF2Q12495 606 aa7.28□□□□□ -1.24
SFB3YHR098C SSP1P38871 571 aa7.27□□□□□ -1.25
SFB3YHR098C MNN4P36044 1178 aa7.27□□□□□ -1.25
SFB3YHR098C YCF1P39109 1515 aaKnown RBP7.26□□□□□ -1.25
SFB3YHR098C MYO4P32492 1471 aa7.26□□□□□ -1.25
SFB3YHR098C YLR419WQ06698 1435 aaKnown RBP7.26□□□□□ -1.25
SFB3YHR098C PSD2P53037 1138 aaKnown RBP7.25□□□□□ -1.25
SFB3YHR098C SPT21P35209 758 aa7.25□□□□□ -1.25
SFB3YHR098C RPC31P17890 251 aa7.24□□□□□ -1.25
SFB3YHR098C DNA2P38859 1522 aa7.24□□□□□ -1.25
SFB3YHR098C SNQ2P32568 1501 aaKnown RBP7.24□□□□□ -1.25
SFB3YHR098C FUN12P39730 1002 aaKnown RBP7.23□□□□□ -1.25
SFB3YHR098C YOR1P53049 1477 aa7.22□□□□□ -1.25
SFB3YHR098C RKR1Q04781 1562 aa7.22□□□□□ -1.25
SFB3YHR098C SMC4Q12267 1418 aa7.22□□□□□ -1.25
SFB3YHR098C EAF7P53911 425 aaKnown RBP7.22□□□□□ -1.25
SFB3YHR098C RPN1P38764 993 aaKnown RBP7.22□□□□□ -1.25
SFB3YHR098C KOG1P38873 1557 aa7.22□□□□□ -1.25
SFB3YHR098C TSC11P40061 1430 aa7.21□□□□□ -1.25
SFB3YHR098C TOP2P06786 1428 aaKnown RBP7.21□□□□□ -1.26
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms