Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC27.19■■□□□ 1.94
HMGB1P09429 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
HMGB1P09429 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
HMGB1P09429 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
HMGB1P09429 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
HMGB1P09429 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
HMGB1P09429 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
HMGB1P09429 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC27.18■■□□□ 1.94
HMGB1P09429 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC27.18■■□□□ 1.94
HMGB1P09429 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC27.18■■□□□ 1.94
HMGB1P09429 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
HMGB1P09429 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
HMGB1P09429 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
HMGB1P09429 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
HMGB1P09429 TK2-216ENST00000564917 1156 ntTSL 3 BASIC27.17■■□□□ 1.94
HMGB1P09429 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC27.17■■□□□ 1.94
HMGB1P09429 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC27.17■■□□□ 1.94
HMGB1P09429 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
HMGB1P09429 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
HMGB1P09429 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC27.17■■□□□ 1.94
HMGB1P09429 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC27.17■■□□□ 1.94
HMGB1P09429 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
HMGB1P09429 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
HMGB1P09429 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
HMGB1P09429 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC27.16■■□□□ 1.94
HMGB1P09429 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
HMGB1P09429 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC27.16■■□□□ 1.94
HMGB1P09429 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
HMGB1P09429 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC27.15■■□□□ 1.94
HMGB1P09429 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
HMGB1P09429 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC27.15■■□□□ 1.94
HMGB1P09429 AL031848.2-201ENST00000607670 837 ntBASIC27.15■■□□□ 1.94
HMGB1P09429 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
HMGB1P09429 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
HMGB1P09429 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
HMGB1P09429 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
HMGB1P09429 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
HMGB1P09429 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
HMGB1P09429 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC27.14■■□□□ 1.94
HMGB1P09429 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
HMGB1P09429 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
HMGB1P09429 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC27.14■■□□□ 1.94
HMGB1P09429 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
HMGB1P09429 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC27.14■■□□□ 1.93
HMGB1P09429 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
HMGB1P09429 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC27.13■■□□□ 1.93
HMGB1P09429 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
HMGB1P09429 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
HMGB1P09429 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
HMGB1P09429 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
HMGB1P09429 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
HMGB1P09429 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
HMGB1P09429 EI24-213ENST00000618552 1747 ntTSL 5 BASIC27.11■■□□□ 1.93
HMGB1P09429 AC137630.3-201ENST00000607245 391 ntBASIC27.11■■□□□ 1.93
HMGB1P09429 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
HMGB1P09429 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
HMGB1P09429 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC27.11■■□□□ 1.93
HMGB1P09429 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC27.11■■□□□ 1.93
HMGB1P09429 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
HMGB1P09429 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
HMGB1P09429 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
HMGB1P09429 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
HMGB1P09429 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC27.09■■□□□ 1.93
HMGB1P09429 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
HMGB1P09429 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
HMGB1P09429 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
HMGB1P09429 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
HMGB1P09429 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
HMGB1P09429 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
HMGB1P09429 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
HMGB1P09429 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC27.08■■□□□ 1.93
HMGB1P09429 AC004448.1-201ENST00000458332 883 ntBASIC27.08■■□□□ 1.93
HMGB1P09429 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
HMGB1P09429 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.92
HMGB1P09429 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
HMGB1P09429 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC27.07■■□□□ 1.92
HMGB1P09429 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC27.07■■□□□ 1.92
HMGB1P09429 ALDH1A3-203ENST00000557963 1670 ntBASIC27.07■■□□□ 1.92
HMGB1P09429 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC27.07■■□□□ 1.92
HMGB1P09429 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
HMGB1P09429 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
HMGB1P09429 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
HMGB1P09429 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC27.06■■□□□ 1.92
HMGB1P09429 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC27.06■■□□□ 1.92
HMGB1P09429 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
HMGB1P09429 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
HMGB1P09429 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
HMGB1P09429 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
HMGB1P09429 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
HMGB1P09429 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
HMGB1P09429 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC27.05■■□□□ 1.92
HMGB1P09429 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
HMGB1P09429 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
HMGB1P09429 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC27.05■■□□□ 1.92
HMGB1P09429 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
HMGB1P09429 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC27.05■■□□□ 1.92
HMGB1P09429 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC27.04■■□□□ 1.92
HMGB1P09429 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
HMGB1P09429 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.04■■□□□ 1.92
HMGB1P09429 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC27.04■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms