Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.45■□□□□ 0.7
SDCBPO00560 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SDCBPO00560 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.45■□□□□ 0.7
SDCBPO00560 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SDCBPO00560 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SDCBPO00560 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
SDCBPO00560 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SDCBPO00560 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SDCBPO00560 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.44■□□□□ 0.7
SDCBPO00560 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDCBPO00560 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
SDCBPO00560 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDCBPO00560 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
SDCBPO00560 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.44■□□□□ 0.7
SDCBPO00560 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.43■□□□□ 0.7
SDCBPO00560 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.43■□□□□ 0.7
SDCBPO00560 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.43■□□□□ 0.7
SDCBPO00560 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SDCBPO00560 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SDCBPO00560 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.42■□□□□ 0.7
SDCBPO00560 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SDCBPO00560 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDCBPO00560 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.42■□□□□ 0.7
SDCBPO00560 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SDCBPO00560 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDCBPO00560 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDCBPO00560 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDCBPO00560 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDCBPO00560 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDCBPO00560 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SDCBPO00560 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SDCBPO00560 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.41■□□□□ 0.7
SDCBPO00560 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDCBPO00560 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDCBPO00560 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDCBPO00560 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.41■□□□□ 0.7
SDCBPO00560 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SDCBPO00560 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SDCBPO00560 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.41■□□□□ 0.7
SDCBPO00560 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDCBPO00560 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SDCBPO00560 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.41■□□□□ 0.7
SDCBPO00560 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDCBPO00560 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
SDCBPO00560 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDCBPO00560 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.4■□□□□ 0.7
SDCBPO00560 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDCBPO00560 U85056.1-201ENST00000616429 682 ntBASIC19.4■□□□□ 0.7
SDCBPO00560 FOXO3B-201ENST00000395675 1928 ntBASIC19.4■□□□□ 0.7
SDCBPO00560 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDCBPO00560 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SDCBPO00560 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.4■□□□□ 0.7
SDCBPO00560 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDCBPO00560 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SDCBPO00560 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SDCBPO00560 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDCBPO00560 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.39■□□□□ 0.69
SDCBPO00560 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.39■□□□□ 0.69
SDCBPO00560 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SDCBPO00560 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SDCBPO00560 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.39■□□□□ 0.69
SDCBPO00560 SPCS2P3-201ENST00000500401 656 ntBASIC19.39■□□□□ 0.69
SDCBPO00560 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.39■□□□□ 0.69
SDCBPO00560 MIR6765-201ENST00000614092 87 ntBASIC19.39■□□□□ 0.69
SDCBPO00560 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SDCBPO00560 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.39■□□□□ 0.69
SDCBPO00560 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDCBPO00560 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SDCBPO00560 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDCBPO00560 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SDCBPO00560 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SDCBPO00560 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.38■□□□□ 0.69
SDCBPO00560 RPS2P7-201ENST00000447334 885 ntBASIC19.38■□□□□ 0.69
SDCBPO00560 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SDCBPO00560 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.38■□□□□ 0.69
SDCBPO00560 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.38■□□□□ 0.69
SDCBPO00560 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDCBPO00560 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDCBPO00560 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDCBPO00560 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SDCBPO00560 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.37■□□□□ 0.69
SDCBPO00560 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDCBPO00560 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
SDCBPO00560 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.37■□□□□ 0.69
SDCBPO00560 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDCBPO00560 DUX4L9-201ENST00000449051 1259 ntBASIC19.37■□□□□ 0.69
SDCBPO00560 ABHD17AP5-201ENST00000580133 923 ntBASIC19.37■□□□□ 0.69
SDCBPO00560 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDCBPO00560 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDCBPO00560 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDCBPO00560 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms