Protein–RNA interactions for Protein: O00300

TNFRSF11B, Tumor necrosis factor receptor superfamily member 11B, humanhuman

Predictions only

Length 401 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF11BO00300 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
TNFRSF11BO00300 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
TNFRSF11BO00300 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TNFRSF11BO00300 AL117328.2-201ENST00000624617 1940 ntBASIC21.21■□□□□ 0.99
TNFRSF11BO00300 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TNFRSF11BO00300 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
TNFRSF11BO00300 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
TNFRSF11BO00300 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 AC026202.3-201ENST00000600805 1127 ntBASIC21.2■□□□□ 0.98
TNFRSF11BO00300 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 ANOS2P-203ENST00000472227 1816 ntBASIC21.2■□□□□ 0.98
TNFRSF11BO00300 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.2■□□□□ 0.98
TNFRSF11BO00300 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF11BO00300 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF11BO00300 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF11BO00300 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF11BO00300 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF11BO00300 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF11BO00300 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF11BO00300 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
TNFRSF11BO00300 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.18■□□□□ 0.98
TNFRSF11BO00300 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF11BO00300 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.18■□□□□ 0.98
TNFRSF11BO00300 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF11BO00300 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TNFRSF11BO00300 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF11BO00300 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TNFRSF11BO00300 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.17■□□□□ 0.98
TNFRSF11BO00300 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF11BO00300 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF11BO00300 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF11BO00300 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF11BO00300 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TNFRSF11BO00300 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 MIR639-201ENST00000384974 98 ntBASIC21.16■□□□□ 0.98
TNFRSF11BO00300 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 AC233723.2-201ENST00000623798 2106 ntBASIC21.16■□□□□ 0.98
TNFRSF11BO00300 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TNFRSF11BO00300 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TNFRSF11BO00300 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
TNFRSF11BO00300 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TNFRSF11BO00300 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
TNFRSF11BO00300 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TNFRSF11BO00300 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFRSF11BO00300 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFRSF11BO00300 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFRSF11BO00300 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFRSF11BO00300 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFRSF11BO00300 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.14■□□□□ 0.97
TNFRSF11BO00300 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TNFRSF11BO00300 MIR7108-201ENST00000614319 87 ntBASIC21.13■□□□□ 0.97
TNFRSF11BO00300 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TNFRSF11BO00300 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TNFRSF11BO00300 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.13■□□□□ 0.97
TNFRSF11BO00300 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms