Protein–RNA interactions for Protein: A0A1B0GX49

TRBV6-4, T-cell receptor beta variable 6-4 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV6-4A0A1B0GX49 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRBV6-4A0A1B0GX49 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRBV6-4A0A1B0GX49 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
TRBV6-4A0A1B0GX49 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 AC120024.1-201ENST00000562672 995 ntBASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 THA1P-201ENST00000590384 1145 ntBASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC16.2■□□□□ 0.18
TRBV6-4A0A1B0GX49 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 AC010980.1-201ENST00000587192 1142 ntBASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRBV6-4A0A1B0GX49 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRBV6-4A0A1B0GX49 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 BEX3-202ENST00000372634 753 ntTSL 2 BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 MIR4508-201ENST00000584178 70 ntBASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 PVT1_1.1-201ENST00000615125 194 ntBASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRBV6-4A0A1B0GX49 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 LTK-203ENST00000453182 2412 ntTSL 2 BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRBV6-4A0A1B0GX49 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 AL033527.3-201ENST00000566366 1196 ntBASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 MIR4281-201ENST00000580852 62 ntBASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRBV6-4A0A1B0GX49 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
TRBV6-4A0A1B0GX49 AC131274.2-201ENST00000580697 1507 ntBASIC16.14■□□□□ 0.18
TRBV6-4A0A1B0GX49 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC16.14■□□□□ 0.17
TRBV6-4A0A1B0GX49 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
TRBV6-4A0A1B0GX49 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRBV6-4A0A1B0GX49 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRBV6-4A0A1B0GX49 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRBV6-4A0A1B0GX49 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRBV6-4A0A1B0GX49 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRBV6-4A0A1B0GX49 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRBV6-4A0A1B0GX49 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRBV6-4A0A1B0GX49 YBX1P4-201ENST00000392794 808 ntBASIC16.13■□□□□ 0.17
TRBV6-4A0A1B0GX49 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms