Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 AC113367.3-201ENST00000508316 1912 ntBASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 NUS1P3-201ENST00000423502 862 ntBASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 VDAC1P7-201ENST00000462417 847 ntBASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 BRI3BPP1-201ENST00000594224 787 ntBASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 AC106028.4-201ENST00000614509 607 ntBASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HIF3AQ9Y2N7 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HIF3AQ9Y2N7 AL137783.1-201ENST00000623494 1896 ntBASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HIF3AQ9Y2N7 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms