Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 FAM86GP-201ENST00000448322 971 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AC009477.1-201ENST00000452936 217 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AL096865.1-201ENST00000606796 927 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AL158211.3-201ENST00000607385 239 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AC008738.7-201ENST00000609744 511 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AL390754.1-201ENST00000619088 582 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AC004840.1-201ENST00000636359 365 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 CLK3P2-201ENST00000427566 1453 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AC138969.3-201ENST00000546612 1459 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AC138932.2-201ENST00000548268 1459 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 AC126755.4-201ENST00000549796 1459 ntBASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM56Q9BRZ2 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 AC012508.2-201ENST00000567613 1472 ntBASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.49■□□□□ 0.07
TRIM56Q9BRZ2 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms