Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 BANP-203ENST00000393207 2438 ntTSL 2 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 AL928921.2-201ENST00000641325 2442 ntBASIC17.24■□□□□ 0.35
ATL3Q6DD88 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 AC104794.3-201ENST00000566840 1248 ntBASIC17.24■□□□□ 0.35
ATL3Q6DD88 AC120045.2-201ENST00000567334 178 ntBASIC17.24■□□□□ 0.35
ATL3Q6DD88 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.24■□□□□ 0.35
ATL3Q6DD88 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.24■□□□□ 0.35
ATL3Q6DD88 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.24■□□□□ 0.35
ATL3Q6DD88 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.24■□□□□ 0.35
ATL3Q6DD88 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 AC041040.2-201ENST00000622926 2899 ntBASIC17.24■□□□□ 0.35
ATL3Q6DD88 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ATL3Q6DD88 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
ATL3Q6DD88 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 INTS4P2-202ENST00000614726 2019 ntBASIC17.23■□□□□ 0.35
ATL3Q6DD88 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 AC134915.1-201ENST00000426461 574 ntBASIC17.23■□□□□ 0.35
ATL3Q6DD88 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 GIMAP3P-201ENST00000495150 836 ntBASIC17.23■□□□□ 0.35
ATL3Q6DD88 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 AL390955.2-201ENST00000603032 514 ntBASIC17.23■□□□□ 0.35
ATL3Q6DD88 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ATL3Q6DD88 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
ATL3Q6DD88 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 KRT18P28-201ENST00000453838 1332 ntBASIC17.22■□□□□ 0.35
ATL3Q6DD88 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 AL161772.1-201ENST00000610494 4412 ntBASIC17.22■□□□□ 0.35
ATL3Q6DD88 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ATL3Q6DD88 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.22■□□□□ 0.35
ATL3Q6DD88 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms