Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.02□□□□□ -0.16
RNF4P78317 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.16
RNF4P78317 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
RNF4P78317 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.02□□□□□ -0.16
RNF4P78317 AC104640.1-201ENST00000562617 2109 ntBASIC14.02□□□□□ -0.16
RNF4P78317 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.02□□□□□ -0.16
RNF4P78317 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.02□□□□□ -0.16
RNF4P78317 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
RNF4P78317 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RNF4P78317 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.02□□□□□ -0.17
RNF4P78317 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.02□□□□□ -0.17
RNF4P78317 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.02□□□□□ -0.17
RNF4P78317 AC006001.1-201ENST00000325130 474 ntBASIC14.02□□□□□ -0.17
RNF4P78317 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.02□□□□□ -0.17
RNF4P78317 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
RNF4P78317 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.02□□□□□ -0.17
RNF4P78317 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.02□□□□□ -0.17
RNF4P78317 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.02□□□□□ -0.17
RNF4P78317 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.02□□□□□ -0.17
RNF4P78317 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 AC244107.1-201ENST00000442033 332 ntBASIC14.02□□□□□ -0.17
RNF4P78317 FO681548.1-201ENST00000455617 1132 ntBASIC14.02□□□□□ -0.17
RNF4P78317 AL590640.2-201ENST00000457038 527 ntBASIC14.02□□□□□ -0.17
RNF4P78317 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.02□□□□□ -0.17
RNF4P78317 AC026434.2-201ENST00000506094 1078 ntBASIC14.02□□□□□ -0.17
RNF4P78317 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.02□□□□□ -0.17
RNF4P78317 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
RNF4P78317 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.02□□□□□ -0.17
RNF4P78317 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.02□□□□□ -0.17
RNF4P78317 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.02□□□□□ -0.17
RNF4P78317 ECM1P1-201ENST00000604092 1279 ntBASIC14.02□□□□□ -0.17
RNF4P78317 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RNF4P78317 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.02□□□□□ -0.17
RNF4P78317 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 AC104581.4-201ENST00000623126 3052 ntBASIC14.02□□□□□ -0.17
RNF4P78317 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
RNF4P78317 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RNF4P78317 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
RNF4P78317 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.02□□□□□ -0.17
RNF4P78317 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 ZBED1P1-201ENST00000502364 1930 ntBASIC14.02□□□□□ -0.17
RNF4P78317 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RNF4P78317 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
RNF4P78317 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.01□□□□□ -0.17
RNF4P78317 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.01□□□□□ -0.17
RNF4P78317 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.01□□□□□ -0.17
RNF4P78317 CD8B2-202ENST00000417670 633 ntBASIC14.01□□□□□ -0.17
RNF4P78317 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.01□□□□□ -0.17
RNF4P78317 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.01□□□□□ -0.17
RNF4P78317 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.01□□□□□ -0.17
RNF4P78317 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.01□□□□□ -0.17
RNF4P78317 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 AC006453.4-201ENST00000636949 1252 ntBASIC14.01□□□□□ -0.17
RNF4P78317 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.01□□□□□ -0.17
RNF4P78317 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RNF4P78317 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.01□□□□□ -0.17
RNF4P78317 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms