Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 AL355864.2-201ENST00000447420 863 ntBASIC15.32■□□□□ 0.04
HLA-DQB2P05538 BCRP2-202ENST00000447763 634 ntBASIC15.32■□□□□ 0.04
HLA-DQB2P05538 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 BCRP6-201ENST00000510112 632 ntBASIC15.32■□□□□ 0.04
HLA-DQB2P05538 BCRP7-201ENST00000511549 544 ntBASIC15.32■□□□□ 0.04
HLA-DQB2P05538 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DQB2P05538 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 AC005229.1-201ENST00000392885 409 ntBASIC15.31■□□□□ 0.04
HLA-DQB2P05538 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 FO681548.1-201ENST00000455617 1132 ntBASIC15.31■□□□□ 0.04
HLA-DQB2P05538 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 AC233724.13-201ENST00000598383 410 ntBASIC15.31■□□□□ 0.04
HLA-DQB2P05538 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DQB2P05538 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 AC092933.1-201ENST00000393644 945 ntBASIC15.3■□□□□ 0.04
HLA-DQB2P05538 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 AC232323.1-201ENST00000540724 2099 ntBASIC15.3■□□□□ 0.04
HLA-DQB2P05538 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.3■□□□□ 0.04
HLA-DQB2P05538 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms