Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.15■□□□□ 0.02
SHOX2O60902 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.15■□□□□ 0.02
SHOX2O60902 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.15■□□□□ 0.02
SHOX2O60902 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.15■□□□□ 0.02
SHOX2O60902 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.15■□□□□ 0.02
SHOX2O60902 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.15■□□□□ 0.02
SHOX2O60902 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SHOX2O60902 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SHOX2O60902 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.15■□□□□ 0.02
SHOX2O60902 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 AC011498.7-201ENST00000624986 2027 ntBASIC15.14■□□□□ 0.01
SHOX2O60902 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 RHPN1-AS1-201ENST00000518049 1918 ntBASIC15.14■□□□□ 0.01
SHOX2O60902 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SHOX2O60902 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SHOX2O60902 AC136604.1-202ENST00000425471 771 ntBASIC15.14■□□□□ 0.01
SHOX2O60902 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.14■□□□□ 0.01
SHOX2O60902 FAM197Y8-203ENST00000450145 560 ntBASIC15.14■□□□□ 0.01
SHOX2O60902 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SHOX2O60902 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.14■□□□□ 0.01
SHOX2O60902 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.14■□□□□ 0.01
SHOX2O60902 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.14■□□□□ 0.01
SHOX2O60902 AC105339.3-201ENST00000560043 636 ntBASIC15.14■□□□□ 0.01
SHOX2O60902 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 AC148477.8-201ENST00000624298 468 ntBASIC15.14■□□□□ 0.01
SHOX2O60902 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC15.14■□□□□ 0.01
SHOX2O60902 AP3S2-216ENST00000617003 1561 ntBASIC15.14■□□□□ 0.01
SHOX2O60902 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SHOX2O60902 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHOX2O60902 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC15.14■□□□□ 0.01
SHOX2O60902 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SHOX2O60902 AC011840.2-201ENST00000563063 1520 ntBASIC15.13■□□□□ 0.01
SHOX2O60902 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.13■□□□□ 0.01
SHOX2O60902 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.13■□□□□ 0.01
SHOX2O60902 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 EMBP1-201ENST00000458200 901 ntBASIC15.13■□□□□ 0.01
SHOX2O60902 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.13■□□□□ 0.01
SHOX2O60902 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.13■□□□□ 0.01
SHOX2O60902 AC015910.1-201ENST00000579400 975 ntBASIC15.13■□□□□ 0.01
SHOX2O60902 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
SHOX2O60902 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms